PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G02320.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 146aa    MW: 14839.3 Da    PI: 8.4883
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G02320.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.15.3e-07114143433
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFeknrypsaeereeL 33 
                        ++t++q+e+Le++++++++ps ++r++L
  OGLUM10G02320.1 114 YVQYTPDQVEALERVYAECPKPSFSRRQQL 143
                      6789************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    
MASSTLWLRP RGEGGGGTRP SCRRCSPPPS PSTCGDGGGG GGGRADPAPD AGGSAVVPPP  60
FPCGGSGEGG EGGNFGGGGG RRGGWRQRWR CPMRSGSGSD GGGYDKAGMD SGKYVQYTPD  120
QVEALERVYA ECPKPSFSRR QQLLCE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30490.13e-15HD-ZIP family protein