PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G03200.2
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 351aa    MW: 38950.7 Da    PI: 9.9011
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G03200.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-054466123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C  Cgk+F+++  +  H ++H
  OGLUM10G03200.2 44 FACRVCGKRFPSQQAMAGHCSSH 66
                     78*****************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    
MSPMRPRSSS ASSTSPVAGK KEKTATKPAG GGARDPPKGR SSSFACRVCG KRFPSQQAMA  60
GHCSSHTRST AAATRITSAR QLLPPPPQSS LSPPPPLPVV ALTVQLAVLF WRLTPLLAAA  120
AVADWSQVAA GIPLSKEQLV VAVAIVVADD GQGQAAEVFL LDLAAEELNL GPSMNNEATS  180
IPKVRSVYEY FTEAFDLLKE DNVQWCPYME EETQRRAPAN LNTLYLRDSS YWLTKKMIVY  240
DIAVEVYNLQ RGDIAEELYS DTTSLWEKLR DNIAGSLEEM MSALDRMRQK CKRIMRRHRA  300
GMHQKSTVPQ DTGLRTPYWN NRLPLLGLPH RQDPQLPHVL GRRQGLWHRL R