PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G04540.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 335aa    MW: 37050.8 Da    PI: 5.1052
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G04540.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC765.2e-2431129297
            NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                      +++fw      ie+++  ++  lP++r+k+i++a e   m+sa++P++++k celf+ el lr+w+ a++ +r+ +  +dia+a+t t+ + fl
  OGLUM10G04540.1  31 MEKFWRMSqeqIEESAGNQELILPISRVKNIIRAKEGGMMLSADTPAFVTKLCELFVQELILRAWVCANSHNREIILGTDIAEAITTTESYHFL 124
                      78899876122555555566679*********************************************************************** PP

            NF-YC  93 vdivp 97 
                       ++v 
  OGLUM10G04540.1 125 ANVVR 129
                      99885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MPIPEKDRVE DNQEDDTFSR LQLLAQQRHA MEKFWRMSQE QIEESAGNQE LILPISRVKN  60
IIRAKEGGMM LSADTPAFVT KLCELFVQEL ILRAWVCANS HNREIILGTD IAEAITTTES  120
YHFLANVVRG HQALGSNIPE IGVSAWKRHK LDEMTSLCHP PQAVQVTDLA NHPPNIPVCP  180
PIGQSGTQHT TSTHVLMMQG ESLHKASKEK SPLNEVMVPT NKVGMTNSSY AVPNGGGATS  240
SKVAIDSQKG ETAQVFSSQH ACPSLEDNYV IPIPAGHGDS FRTLDEANIP QLHQEQKNFI  300
SQDAIVGENI PLNESLEKSK HMDEDLLFPD KDLPE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.14e-19NF-YC family protein