PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G05830.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 248aa    MW: 27632.9 Da    PI: 7.29
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G05830.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY253.8e-0853962059
                     S-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
             WRKY 20 fprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59
                       r YYrC+++   +C+++k v++++  dp +  +tY   H+++
  OGLUM10G05830.1 53 IYRLYYRCSYRddrNCMATKVVQQENdADPPLYRVTYIHPHTCN 96
                     5699******99999*******9865269************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MASRHQLQTM QFTDPASRSP RPGGGVHGQP QPTPMSSPFS SRKPRRWCKT VAIYRLYYRC  60
SYRDDRNCMA TKVVQQENDA DPPLYRVTYI HPHTCNPSPP APTPAHVFTE PPPAKAEEHH  120
AVLFRFSSTA GGHTPNNAVH RQQWQPAAAT MAAGAQAQLS MTMSDDEREQ PPAAIRSAPP  180
ARRLSMFRAV VDGLRQMRSS APPTPSSSMV VDDGWDTFSS FDLDTCEFSV DDELLCGDHM  240
YFPDSMQQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66600.14e-11WRKY family protein