PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM10G08720.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 390aa MW: 42215.2 Da PI: 7.0566

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM10G08720.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	81.5	1.8e-25	1	135	1	125
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya..tgkrknratksgyWkatgkd 89 +p+Gf F P+d el+ ++k v+gk + ++v+k+++i++++P L+ + +++ e+ +yfFskr+ +++ +++r+ r+++ g+Wka+ ++ OGLUM10G08720.1 1 MPVGFYFVPKDLELLAILMCKLVRGKVPGAlNNVFKHIRILEFHPALLHeTYIETMEDgYIYFFSKRQFATKarNKRRPMRVADGGTWKASDES 94 699********************996551456**********8455655444366*9985544338899999********** PP NAM 90 kevlsk..kgelvglkktLvfy...kgrapkgektdWvmhe 125 k+v sk +g +vg k t+vfy + ++++ kt+W mhe OGLUM10G08720.1 95 KTVRSKkvGGIDVGQKFTMVFYerrFEGDQNPIKTNWGMHE 135 99888899******43313456678*****9 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MPVGFYFVPK DLELLAILMC KLVRGKVPGA LNNVFKHIRI LEFHPALLHE TYIETMEDGY 60 IYFFSKRQFA TKARNKRRPM RVADGGTWKA SDESKTVRSK KVGGIDVGQK FTMVFYERRF 120 EGDQNPIKTN WGMHERKEDT EPVNAAATVS STDEPSTPAA LPLPTPPPRP LPDMAGSSSA 180 TSLLPLQLPG LAGSSSTMPL ALPLQLPGLP RSSSVMSLPG LAGEMTSMGH GETGEHGLDA 240 STPSSELPQD WYDEYEVAYG AVAPPAPSTI IWAALPSSPT AWWPPSNGGP MQHDGYLGMA 300 DPASYTLEHL LPTAAIPPEP MAPPKSSPAP PPAVGHHRLS PPHDAAGNYD HLELANYGGV 360 RRSTSIIIII HRSLRMARTA TVPWPTATHS

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MPVGFYFVPK DLELLAILMC KLVRGKVPGA LNNVFKHIRI LEFHPALLHE TYIETMEDGY  60
IYFFSKRQFA TKARNKRRPM RVADGGTWKA SDESKTVRSK KVGGIDVGQK FTMVFYERRF  120
EGDQNPIKTN WGMHERKEDT EPVNAAATVS STDEPSTPAA LPLPTPPPRP LPDMAGSSSA  180
TSLLPLQLPG LAGSSSTMPL ALPLQLPGLP RSSSVMSLPG LAGEMTSMGH GETGEHGLDA  240
STPSSELPQD WYDEYEVAYG AVAPPAPSTI IWAALPSSPT AWWPPSNGGP MQHDGYLGMA  300
DPASYTLEHL LPTAAIPPEP MAPPKSSPAP PPAVGHHRLS PPHDAAGNYD HLELANYGGV  360
RRSTSIIIII HRSLRMARTA TVPWPTATHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12910.1	3e-11	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM10G08720.1