PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM10G10050.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 474aa MW: 50719.9 Da PI: 7.7945

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM10G10050.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.3e-05	104	126	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H OGLUM10G10050.1 104 FVCEVCNKGFQRDQNLQLHRRGH 126 89*******************88 PP
2	zf-C2H2	13	0.00031	189	211	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk++ +s+ k H +++ OGLUM10G10050.1 189 WRCERCGKRYAVHSDWKAHVKNC 211 58******************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MLLSDLSSDQ EATGSNSHGG GGGDRMVLGS HGAAHVMLSN LFLPPAAAAA TMLLPAAPVM 60 VRPAAMAAAQ EPRAKKKRSL PGNPDPEAEV IALSPRALVA TNRFVCEVCN KGFQRDQNLQ 120 LHRRGHNLPW KLRHRAAAVS AVTTAAPAPR KRVYVCPEPT CVHHDPARAL GDLTGIKKHF 180 SRKHGEKRWR CERCGKRYAV HSDWKAHVKN CGTREYRCDC GILFSRKDSL LTHRAFCDAL 240 AEESARLLAA ANNSSSITTT TCNNSNISNN NNNNNINSIS NSNNLLITSS SSSPPLFLPF 300 STTPAENPNP NQLLFLQQHQ AAHHQLLLPQ FQQPPSSPPA YFDHLAFCGG GGVITGSSCN 360 DDNSSIAGDV MVAAGGDSVS FGLTSEGSVT MHAGDVGRRR LTRDFLGVDH DAGEVDELEL 420 DELPADLSTT AAACQGCNFA AATTAACCAT DFTTGSRQYL GRLPPVNETW SHNF

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MLLSDLSSDQ EATGSNSHGG GGGDRMVLGS HGAAHVMLSN LFLPPAAAAA TMLLPAAPVM  60
VRPAAMAAAQ EPRAKKKRSL PGNPDPEAEV IALSPRALVA TNRFVCEVCN KGFQRDQNLQ  120
LHRRGHNLPW KLRHRAAAVS AVTTAAPAPR KRVYVCPEPT CVHHDPARAL GDLTGIKKHF  180
SRKHGEKRWR CERCGKRYAV HSDWKAHVKN CGTREYRCDC GILFSRKDSL LTHRAFCDAL  240
AEESARLLAA ANNSSSITTT TCNNSNISNN NNNNNINSIS NSNNLLITSS SSSPPLFLPF  300
STTPAENPNP NQLLFLQQHQ AAHHQLLLPQ FQQPPSSPPA YFDHLAFCGG GGVITGSSCN  360
DDNSSIAGDV MVAAGGDSVS FGLTSEGSVT MHAGDVGRRR LTRDFLGVDH DAGEVDELEL  420
DELPADLSTT AAACQGCNFA AATTAACCAT DFTTGSRQYL GRLPPVNETW SHNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	4e-90	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM10G10050.1