PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G10610.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 184aa    MW: 19620.3 Da    PI: 10.6215
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G10610.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.87.8e-152066349
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     ie k ++qvt skRr g++KKA+ELS   +a +a++ fs+ g+++ +
  OGLUM10G10610.1 20 IEGKEKQQVTCSKRRRGLFKKASELSRTSGASIAIVSFSKAGNVFAF 66
                     89999**************************************9887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    
MGRPRGGTSK GKQKIEMCCI EGKEKQQVTC SKRRRGLFKK ASELSRTSGA SIAIVSFSKA  60
GNVFAFGAPS VDAVLRRHAV AGPPTSTAHG HAGGDVFTGD EDPEVLNALK RATDEATAEV  120
AAEDARLSGV EGKIARAMAA ERRFWWEANV EALGEAELPV FDRALQKLRG AVVRRRLAAA  180
TRSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.12e-20M-type_MADS family protein