PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM10G14600.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 411aa MW: 44331.4 Da PI: 8.4151

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM10G14600.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.1	4.1e-13	3	51	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+l+++ +++G g +W + + +g+ R++ +c+srw++yl OGLUM10G14600.1 3 KGKWSKEEDDLIKNHMEKYGIGrSWQALSDALGLQRCGRSCRSRWLNYL 51 79****************999**********************97 PP
2	Myb_DNA-binding	32	3e-10	58	101	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g +++ E+ ++ + + G+ W++Ia+ ++ gRt+ +k++w++ OGLUM10G14600.1 58 GDFSPAEERIICKMYSKKGSS-WSAIAAQLP-GRTDLAVKNYWNST 101 679**************99.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MKKGKWSKEE DDLIKNHMEK YGIGRSWQAL SDALGLQRCG RSCRSRWLNY LRPGLKHGDF 60 SPAEERIICK MYSKKGSSWS AIAAQLPGRT DLAVKNYWNS TLKKRFPAAA AARSTAAARR 120 RHRPAASATT SSDDDDDVDV DDATPPGLAL VVYSEGSTAA AAAAGELAPY SISSPAATAD 180 AAEEEEPIAA VPISTCILAL PPPPPPPPPP PSDATGGEVS IPCFPFSPLP FIEPDLPELT 240 WTTDLDDITA TFDAAACRYP KRPHPITPDS PCLPKLPAIA GFDDVQSFLS CICLRYNTSP 300 FLLARATAAP PAAAADRCLA GRRCLYSTTP PPPLSPLHWR CSRRDPELGA DVSALLLRGR 360 LGARQLFDEL PHRVRWRRGY LRAAFAASVS NLNARDGHRG VKAEAMKSSA Q

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MKKGKWSKEE DDLIKNHMEK YGIGRSWQAL SDALGLQRCG RSCRSRWLNY LRPGLKHGDF  60
SPAEERIICK MYSKKGSSWS AIAAQLPGRT DLAVKNYWNS TLKKRFPAAA AARSTAAARR  120
RHRPAASATT SSDDDDDVDV DDATPPGLAL VVYSEGSTAA AAAAGELAPY SISSPAATAD  180
AAEEEEPIAA VPISTCILAL PPPPPPPPPP PSDATGGEVS IPCFPFSPLP FIEPDLPELT  240
WTTDLDDITA TFDAAACRYP KRPHPITPDS PCLPKLPAIA GFDDVQSFLS CICLRYNTSP  300
FLLARATAAP PAAAADRCLA GRRCLYSTTP PPPLSPLHWR CSRRDPELGA DVSALLLRGR  360
LGARQLFDEL PHRVRWRRGY LRAAFAASVS NLNARDGHRG VKAEAMKSSA Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37780.1	6e-40	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM10G14600.1