PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM10G15720.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 864aa MW: 90266 Da PI: 5.9929

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM10G15720.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	99.2	3.6e-31	180	264	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r++ lk+plWeevs+k++e+g++rs+k+Ckek+en++k+yk++ke++ +r ++ +t+++f+qlea OGLUM10G15720.1 180 RWPRQETLALLKIRSDMDAAFRDATLKGPLWEEVSRKLAEEGYRRSAKKCKEKFENVHKYYKRTKESRAGR--NDGKTYRFFTQLEA 264 8******************************************************************97..56668*****85 PP
2	trihelix	111.1	6.8e-35	556	641	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+++++r++++ k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a OGLUM10G15720.1 556 RWPKAEVHALIQLRSNLDNRYQEAGPKGPLWEEISAGMRRLGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 641 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 864 aa Download sequence
MAIYYLEREG LTHNMPMHGH FYTPLPLNQR HADTTNAADM TRGPMRMWAP HVSGVSVSPD 60 VLIIPSPPFP SGNTRGGGGG GGGSSMQQQQ PGGGGGGVQQ FGAVAPEMSP FSPAGGGGGG 120 RISMAEAASP ISSRPPPAQQ QFDELGVGGG GGGGGGFDAE ALAAAAVGEE GASGGAGGNR 180 WPRQETLALL KIRSDMDAAF RDATLKGPLW EEVSRKLAEE GYRRSAKKCK EKFENVHKYY 240 KRTKESRAGR NDGKTYRFFT QLEALHGTAA GVVAAPSPVT SLAPPPATAV GVSGGVRAPA 300 EPPPAVVMGN VMSFSTSNTE EYSDEEDSDD EGTEDMGGGG GDERGKRKRL SEGGAAAGGG 360 GGGGGGGGSG KMMRFFEGLM KQVMERQEAM QQRFLEAIEK REQDRMIREE AWRRQEMARL 420 AREQEILAQE RAMAASRDAA VVSFIQKITG QTIPMPPIIA APAITVMPPP APSQPPQPPP 480 PPSQPTPITS VAPAPPPPPP AAAAAASQPS PQATKSPLPA TPQTQSSMDI VMTAAEAHDA 540 GYDGSGGGGG QPSSSRWPKA EVHALIQLRS NLDNRYQEAG PKGPLWEEIS AGMRRLGYSR 600 SSKRCKEKWE NINKYFKKVK ESNKKRPEDS KTCPYFHQLD ALYRNKAALN SSSSTAAAAA 660 PALPPPEHAE PAVTVAAPIS QTPPPPPQPV TTTKNGNGTS STNGEGGGGG SGGMQMQASN 720 GSVVAGNKFF TGAAAKKPED IMKEMMEQRP QQPAAANNAF NRTDGGGGGG GVDSDNMDED 780 NEDDYDDDDD DDDDDVDGNK MQYEIQFQHQ HHHQQPPQHR HQQSVVRPNA AASAAAGGNP 840 PGTAAPATAA AATTTTGSFL AMVQ

Sequence ? help Back to Top

Protein Sequence Length: 864 aa Download sequence

MAIYYLEREG LTHNMPMHGH FYTPLPLNQR HADTTNAADM TRGPMRMWAP HVSGVSVSPD  60
VLIIPSPPFP SGNTRGGGGG GGGSSMQQQQ PGGGGGGVQQ FGAVAPEMSP FSPAGGGGGG  120
RISMAEAASP ISSRPPPAQQ QFDELGVGGG GGGGGGFDAE ALAAAAVGEE GASGGAGGNR  180
WPRQETLALL KIRSDMDAAF RDATLKGPLW EEVSRKLAEE GYRRSAKKCK EKFENVHKYY  240
KRTKESRAGR NDGKTYRFFT QLEALHGTAA GVVAAPSPVT SLAPPPATAV GVSGGVRAPA  300
EPPPAVVMGN VMSFSTSNTE EYSDEEDSDD EGTEDMGGGG GDERGKRKRL SEGGAAAGGG  360
GGGGGGGGSG KMMRFFEGLM KQVMERQEAM QQRFLEAIEK REQDRMIREE AWRRQEMARL  420
AREQEILAQE RAMAASRDAA VVSFIQKITG QTIPMPPIIA APAITVMPPP APSQPPQPPP  480
PPSQPTPITS VAPAPPPPPP AAAAAASQPS PQATKSPLPA TPQTQSSMDI VMTAAEAHDA  540
GYDGSGGGGG QPSSSRWPKA EVHALIQLRS NLDNRYQEAG PKGPLWEEIS AGMRRLGYSR  600
SSKRCKEKWE NINKYFKKVK ESNKKRPEDS KTCPYFHQLD ALYRNKAALN SSSSTAAAAA  660
PALPPPEHAE PAVTVAAPIS QTPPPPPQPV TTTKNGNGTS STNGEGGGGG SGGMQMQASN  720
GSVVAGNKFF TGAAAKKPED IMKEMMEQRP QQPAAANNAF NRTDGGGGGG GVDSDNMDED  780
NEDDYDDDDD DDDDDVDGNK MQYEIQFQHQ HHHQQPPQHR HQQSVVRPNA AASAAAGGNP  840
PGTAAPATAA AATTTTGSFL AMVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	3e-50	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OGLUM10G15720.1