PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G17040.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 319aa    MW: 33755.9 Da    PI: 9.9412
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G17040.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.81.2e-2938155199
                      EEEE-..-HHHHTT-EE--HHH.HTT...................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                      f+kv tpsdv+k++rlv+pk++ae++                   g    ++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L 
  OGLUM10G17040.1  38 FEKVVTPSDVGKLNRLVIPKQHAERYfpldaaagaggggggggggG--GGKGLVLSFEDRTGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRLG 129
                      99******************************99999999998543..347789**************************************** PP

                      TT-EEEEEE-.SS.SEE..EEEEE-S CS
               B3  76 egDfvvFkld.gr.sefelvvkvfrk 99 
                      +gD+v F +  g+  +++l++ ++r+
  OGLUM10G17040.1 130 AGDTVSFGRGlGDaARGRLFIDFRRR 155
                      ********666888999999999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MEFTPISPLT RVAGGEEDSE RGAAAAAAWA VVEKEHMFEK VVTPSDVGKL NRLVIPKQHA  60
ERYFPLDAAA GAGGGGGGGG GGGGGKGLVL SFEDRTGKAW RFRYSYWNSS QSYVMTKGWS  120
RFVKEKRLGA GDTVSFGRGL GDAARGRLFI DFRRRRHDAG SFMFPPTAAP PSHSHHHHQR  180
HHPPLPSVPL CPWRDYTTAY GGGYGYGYGY GYGGGSTPAS SRHVLFLRPQ VPAAVVLKSV  240
PVHVAAASAV QEAATTTRPK RVRLFGVNLD CPAAMDDDDD IAGAASRTAA SSLLQLPSPS  300
SSTSSSTAGK KICSLDLGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.15e-47B3 family protein