PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G18330.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 388aa    MW: 39727.9 Da    PI: 7.7794
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G18330.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.76.5e-18279314136
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 
                      C++C + kTp+WR gp g+ktLCnaCG+++++ +l+
  OGLUM10G18330.1 279 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLM 314
                      ********************************9976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    
MASEWEMAMG VDLGMGMSTY HNASGGIAAA PMMGHHGGGG GGGGYSAAHH HHHHYYGMPH  60
QAAMGDAMRV DDLLDLSNTP GAHDFFPASA AAAAAGDHGH HHHHHHIGGM GEPSGATPSA  120
TSSDHQTSML SFADDFYIPT EDAAELEWLS KFVDDSYSDM PNYQSSAHAA MAAAAASAAN  180
NGGGSSAGQD SCLTAAPGRG ARSKRSRATA AAAAAWHSLV PRPPSQSSPS SSCSSSDFPS  240
SNKPSGAARP NGSGGGSRGK KSPGPAGAEV GMEAGVRRCT HCASEKTPQW RTGPLGPKTL  300
CNACGVRFKS GRLMPEYRPA ASPTFVLTQH SNSHRKVMEL RRQKELLIIR GSHRDAAAAA  360
AAAAAAAAAG SAAATGRPEL MFRDYGVC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.12e-45GATA family protein