PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM10G19040.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

STAT

Protein Properties

Length: 608aa MW: 67453.2 Da PI: 6.0722

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM10G19040.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	188.7	6.6e-59	176	296	1	121
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklk 93 l+v+l++a+g+++ kd e+vasL+yad+g++veks dd+e+pLLis+dG+e+++++rpl+++rGra+fklkisqLsskcdn+Lfri f+++ +k OGLUM10G19040.2 176 LEVILVDAFGEAA-KDREIVASLVYADNGALVEKSrDDSEPPLLISCDGIEYPAVSRPLPIIRGRALFKLKISQLSSKCDNKLFRIFFSTLGMK 268 79********7.*****************9****************************************************** PP STAT 94 kypfleavskpirCisrsrntrsssltk 121 +ypflea+skpirCisr+r++r+++++k OGLUM10G19040.2 269 RYPFLEAYSKPIRCISRNRTSRPLGSAK 296 ********************988765 PP

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence
MAAPPGRGGA DGYCDLRDVR LELDPGKVRG GGGFTVCFWL YLSSSARPSS VILHQVAEGG 60 GDKVPFLALG EGNKLILFPL LGFHREAPTP GSSYPWTDIT NLTEVNECPL DNWFHVGCEV 120 TENIMRLHLD GDLVAETHLH SLYNKPDYQD DANQINLLGS EDKLEGYASC RRNFILEVIL 180 VDAFGEAAKD REIVASLVYA DNGALVEKSR DDSEPPLLIS CDGIEYPAVS RPLPIIRGRA 240 LFKLKISQLS SKCDNKLFRI FFSTLGMKRY PFLEAYSKPI RCISRNRTSR PLGSAKRIGS 300 ASMGDIQSIN NCEGFGHSGK ANGRLQTHDP SSVNKHAKKM VLDKGAQDVM VSDSTASDYD 360 SMDAGSSWSL SDGDDVESFS DAEIFRYCLD GTHERSKFLR AAAPSVNEDD LIKLANQVSL 420 YSGCAHHRNQ ILMSKQLLQE GADIWSIISK NNERALWSSA VPEIKAKFLE IVHPSNRGLL 480 EQDFEVLRGI SGCGDDIGRD EFDKLWSWLY PVAVALSKDK INRLWDFTAH RWIEGLITLQ 540 ETENALRSSQ DRLMKPGTFV LRFPTTRSWP HPDAGSLVVT YVGSDNSIHH RLLSLDVRVD 600 RLPSSMQS

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence

MAAPPGRGGA DGYCDLRDVR LELDPGKVRG GGGFTVCFWL YLSSSARPSS VILHQVAEGG  60
GDKVPFLALG EGNKLILFPL LGFHREAPTP GSSYPWTDIT NLTEVNECPL DNWFHVGCEV  120
TENIMRLHLD GDLVAETHLH SLYNKPDYQD DANQINLLGS EDKLEGYASC RRNFILEVIL  180
VDAFGEAAKD REIVASLVYA DNGALVEKSR DDSEPPLLIS CDGIEYPAVS RPLPIIRGRA  240
LFKLKISQLS SKCDNKLFRI FFSTLGMKRY PFLEAYSKPI RCISRNRTSR PLGSAKRIGS  300
ASMGDIQSIN NCEGFGHSGK ANGRLQTHDP SSVNKHAKKM VLDKGAQDVM VSDSTASDYD  360
SMDAGSSWSL SDGDDVESFS DAEIFRYCLD GTHERSKFLR AAAPSVNEDD LIKLANQVSL  420
YSGCAHHRNQ ILMSKQLLQE GADIWSIISK NNERALWSSA VPEIKAKFLE IVHPSNRGLL  480
EQDFEVLRGI SGCGDDIGRD EFDKLWSWLY PVAVALSKDK INRLWDFTAH RWIEGLITLQ  540
ETENALRSSQ DRLMKPGTFV LRFPTTRSWP HPDAGSLVVT YVGSDNSIHH RLLSLDVRVD  600
RLPSSMQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78540.1	1e-132	STAT family protein

Link Out ? help Back to Top
Ensembl	OGLUM10G19040.2