PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G19330.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 329aa    MW: 35964.7 Da    PI: 6.0989
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G19330.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.74.5e-5361331128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtd+elv +yLk+kv++ k+el evi+ +d+yk+ePw+Lp k  + +++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd+++
  OGLUM10G19330.1   6 LPPGFRFHPTDDELVGYYLKRKVDSLKIEL-EVIPVIDLYKFEPWELPeKsFLPKRDLEWFFFCPRDRKYPNGSRTNRATSTGYWKATGKDRKI 98 
                      79****************************.99**************95334445667************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +  ge+ gl+ktLvfykgrap ge+tdWvmheyrl
  OGLUM10G19330.1  99 AC-AGEVFGLRKTLVFYKGRAPGGERTDWVMHEYRL 133
                      **.999****************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MGTMTLPPGF RFHPTDDELV GYYLKRKVDS LKIELEVIPV IDLYKFEPWE LPEKSFLPKR  60
DLEWFFFCPR DRKYPNGSRT NRATSTGYWK ATGKDRKIAC AGEVFGLRKT LVFYKGRAPG  120
GERTDWVMHE YRLCQDLAHG VSNFIGAYAL CRVIKRHEAG LHGEPPAAKA KGMISKVSSS  180
SSLVTVEHQL SSRGNASPSF TPANNGSPLV DEMFVGGGGG DPFQLLPSCV PYHGGDACGF  240
DLPPLCMPQT QDPFFSDAGF TQAAPPLYGD VMGSVSEHEL KWDTLGGYSG GGGGELWNAA  300
AAPLLCRQAS DGDDLTAWFT AADDNMSVF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.12e-84NAC family protein