PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM10G19510.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 699aa MW: 75103.8 Da PI: 6.6633

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM10G19510.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.4e-12	524	569	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L OGLUM10G19510.1 524 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 569 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence
MNLWTDDNAS MMEAFMASAD LPAFPWGAAS TPPPPPPPPH HHHQQQQQQV LPPPAAAPAA 60 AAFNQDTLQQ RLQSIIEGSR ETWTYAIFWQ SSIDVSTGAS LLGWGDGYYK GCDDDKRKQR 120 SSTPAAAAEQ EHRKRVLREL NSLIAGAGAA PDEAVEEEVT DTEWFFLVSM TQSFPNGLGL 180 PGQALFAAQP TWIATGLSSA PCDRARQAYT FGLRTMVCLP LATGVLELGS TDVIFQTGDS 240 IPRIRALFNL SAAAASSWPP HPDAASADPS VLWLADAPPM DMKDSISAAD ISVSKPPPPP 300 PHQIQHFENG STSTLTENPS PSVHAPTPSQ PAAPPQRQQQ QQQSSQAQQG PFRRELNFSD 360 FASNGGAAAP PFFKPETGEI LNFGNDSSSG RRNPSPAPPA ATASLTTAPG SLFSQHTPTL 420 TAAANDAKSN NQKRSMEATS RASNTNNHPA ATANEGMLSF SSAPTTRPST GTGAPAKSES 480 DHSDLEASVR EVESSRVVAP PPEAEKRPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF 540 YALRAVVPNV SKMDKASLLG DAISYINELR GKLTALETDK ETLQSQMESL KKERDARPPA 600 PSGGGGDGGA RCHAVEIEAK ILGLEAMIRV QCHKRNHPAA RLMTALRELD LDVYHASVSV 660 VKDLMIQQVA VKMASRVYSQ DQLNAALYTR IAEPGTAAR

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence

MNLWTDDNAS MMEAFMASAD LPAFPWGAAS TPPPPPPPPH HHHQQQQQQV LPPPAAAPAA  60
AAFNQDTLQQ RLQSIIEGSR ETWTYAIFWQ SSIDVSTGAS LLGWGDGYYK GCDDDKRKQR  120
SSTPAAAAEQ EHRKRVLREL NSLIAGAGAA PDEAVEEEVT DTEWFFLVSM TQSFPNGLGL  180
PGQALFAAQP TWIATGLSSA PCDRARQAYT FGLRTMVCLP LATGVLELGS TDVIFQTGDS  240
IPRIRALFNL SAAAASSWPP HPDAASADPS VLWLADAPPM DMKDSISAAD ISVSKPPPPP  300
PHQIQHFENG STSTLTENPS PSVHAPTPSQ PAAPPQRQQQ QQQSSQAQQG PFRRELNFSD  360
FASNGGAAAP PFFKPETGEI LNFGNDSSSG RRNPSPAPPA ATASLTTAPG SLFSQHTPTL  420
TAAANDAKSN NQKRSMEATS RASNTNNHPA ATANEGMLSF SSAPTTRPST GTGAPAKSES  480
DHSDLEASVR EVESSRVVAP PPEAEKRPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF  540
YALRAVVPNV SKMDKASLLG DAISYINELR GKLTALETDK ETLQSQMESL KKERDARPPA  600
PSGGGGDGGA RCHAVEIEAK ILGLEAMIRV QCHKRNHPAA RLMTALRELD LDVYHASVSV  660
VKDLMIQQVA VKMASRVYSQ DQLNAALYTR IAEPGTAAR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	506	514	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	1e-131	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM10G19510.1