PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G19540.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 891aa    MW: 95677.3 Da    PI: 5.7143
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G19540.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-20144199156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  OGLUM10G19540.1 144 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 199
                      688999***********************************************998 PP
2START129.93e-413595902206
                      HHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT CS
            START   2 laeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv................dsgealrasgvvdmvlallveellddkeqW 72 
                      la +aa++l ++  a+ep+Wv+ +       e           e ++                  + e  r+ +vv+m++ +lv  +ld + +W
  OGLUM10G19540.1 359 LAATAADQLARMCRAGEPLWVRQRgaevmavE-----------EHARMfswpvdgakqgdggavARAEGTRDNAVVIMNSINLVDAFLDAN-KW 440
                      678999******************66554333...........3333344444445567778888888888999*****************.** PP

                      -TT-S....EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--...-TTSEE-EESSE CS
            START  73 detla....kaetlevissg........galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe..sssvvRaellpS 150
                       e ++    ka t++ i+ g        g+l lm+ae q+lsplv+ R++vf Ry+     +g+w+ivd   +  ++     ++svvR++++pS
  OGLUM10G19540.1 441 MELFPsivcKARTIQIINHGavsghlgsGTLLLMQAEVQFLSPLVAaREVVFFRYCVHnADEGSWAIVDFPAEGFEE--GllQASVVRCRRRPS 532
                      **********************************************************9999*******55555555..356************ PP

                      EEEEEEECTCEEEEEEEE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 151 giliepksnghskvtwvehvdlkgrlp..hwllrslvksglaegaktwvatlqrqcek 206
                      g++i++++ng+s+v+wveh+++ g     + ++r  v sg+a+ga +w++ lqrqce+
  OGLUM10G19540.1 533 GCIIQDMPNGYSRVVWVEHMEMVGEEKplQPVFRDYVASGAAFGATRWLSILQRQCER 590
                      *********************98765449***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 891 aa     Download sequence    
MFGDCQVLSS MAAMAGASSS ADALFASPLI PNPALAGFMS SSAAMPFHHF SNAAATLIPP  60
HDTAIYVRAV QKEEGLMGGL HVAKDEEMDL EMDMELSGGS GSAHLDGLLS FADVDDDHKP  120
QHSGHDQLPD AAQPSGAAGG NAKKKRYHRH TAHQIQQMEA LFKECPHPDD KQRLKLSQEL  180
GLKPRQVKFW FQNRRTQMKA QQDRADNVIL RAENENLKSD NFRLQAAIRN VVCPNCGHAA  240
VLADMSYEEQ QLRIENARLK DELDRLACIA TRYGGGGGRQ PVLSTSALSC ISAPPPVLMP  300
PLDLDMNVYS RHFAEQAPVM GCGDLIPPPV VPQHDGAAAY MGAMMAPVQE QDKQLVVDLA  360
ATAADQLARM CRAGEPLWVR QRGAEVMAVE EHARMFSWPV DGAKQGDGGA VARAEGTRDN  420
AVVIMNSINL VDAFLDANKW MELFPSIVCK ARTIQIINHG AVSGHLGSGT LLLMQAEVQF  480
LSPLVAAREV VFFRYCVHNA DEGSWAIVDF PAEGFEEGLL QASVVRCRRR PSGCIIQDMP  540
NGYSRVVWVE HMEMVGEEKP LQPVFRDYVA SGAAFGATRW LSILQRQCER LASELARNIA  600
DLGVIRTPEA RTNMMKLSQR MITTFCANIS ASGTQSWTAL SDSTQDTIRV TTRKNTEPGQ  660
PSGVILTAVS TSWLPFTHQQ VFELLADEQQ RCQLEILSNG GSLHEVAHIA NGSHPRNCIS  720
LLRINAASNS SQNVELLLQE SSTHPDGGSL VVFATVDVDA IQVTMSGEDP SYIPLLPLGF  780
AIFPATSPSP AAAPTISSST TTTTGNGNGE TSSTPPRNSS SNNNNADELL PPNGCLLTVG  840
MQVLASAVPS AKLNLSSVTA INSHVCNAIH QITAALKGSA GGAGGEPASD Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0HD-ZIP family protein