PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G01380.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 238aa    MW: 25607.4 Da    PI: 4.4188
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G01380.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.12.7e-1013411848
                     HTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +lG++ W++Ia++++  Rt++++k++w+++l
  OGLUM11G01380.1 13 LLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 41
                     69*99.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MEYNNGHGIF ESLLGNRWAA IASYLPQRTD NDIKNYWNTH LKKKLAAAAN STSAASNRHP  60
IFADATFPSA AGSHTVSSNS DVNQMAAIAR RSPFADCPSS SYASSMDNIS KLLDGFMKTN  120
SPSPPPPPLQ HYDGGYYDDV KPAVDVVGNP LLSSFDCMSG ADLDCCFDVH QQQPASSFME  180
YGGYGGGYGD ESKQQLMNQA AAPLSSIEKW LFDEAAAAEQ VADLMDLSDG CCSVPMMF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.12e-15MYB family protein