PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G03170.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 290aa    MW: 30844.4 Da    PI: 6.9235
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G03170.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.12e-41181492128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      +pGfrF Pt+eel+ +yL+++++g++ ++e+vi+ vd+y ++P++L +    + + ++++w+fF++r++++ +g r+ r+t sgyWkatg+   
  OGLUM11G03170.1  18 TPGFRFYPTEEELLGFYLRHRLAGTRPDVERVIPVVDVYGYHPSQLAAvageASARDTEQWFFFCPRAERELHGGRPARTTPSGYWKATGSPSC 111
                      69***************************99***************84455333335569*******************************999 PP

              NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      v+s+ +++++g+k+t+vfy+grap+g+kt+W m+ey++
  OGLUM11G03170.1 112 VISSaTNRVIGVKRTMVFYQGRAPTGTKTRWKMNEYKA 149
                      998868889***************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
MATTRSGGGG AISDPFATPG FRFYPTEEEL LGFYLRHRLA GTRPDVERVI PVVDVYGYHP  60
SQLAAVAGEA SARDTEQWFF FCPRAERELH GGRPARTTPS GYWKATGSPS CVISSATNRV  120
IGVKRTMVFY QGRAPTGTKT RWKMNEYKAV ADDAAMLHPM APPRLRNELG VCRVYISTGT  180
LRSFDRRPLD NQAAPTQQQV MPSLTAAAAV NTNLAGAGAG AGVVFAGAQG DSSRDCSSSS  240
GSRELAGGAD GSEDDAIDWN SLISSATADD LGFNTVVGFD PSIVGSWPQV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.13e-67NAC family protein