PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM11G03510.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 900aa MW: 97751.4 Da PI: 6.2606

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM11G03510.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.1	0.00074	705	742	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLre++P+ a K s + Lek+v+++ Lq OGLUM11G03510.1 705 RQLIQDRIKELREMVPNgA------KCSIDALLEKTVKHMLFLQ 742 67799**********66......999999******99998 PP

Sequence ? help Back to Top
Protein Sequence Length: 900 aa Download sequence
MAVGDALRRL CEEVGWSYAV FWKAIGAADP VHLVWEDGYC GHASCPAGSD PSEALPTDVG 60 CAAAADTMTM CSLVNKVMAS QVHVVGEGTV GRAAFTGNHQ WIIHGTANDH GIPSEVAAEM 120 SYQFRVGIQT IAIIPVLPRG VLQLGSTGVV LENKSFMTHA KKLCSQLNNR SSMVVSSSVK 180 NSSSQQGRSR PLHGASNVQS TENRSKLFSQ FPVTCEQYNH PDTMAVSGST SLNACMNGSL 240 LKIALLNGQA VREHIVYSKP DVRFIQQVYR DGQLGSNAQS IAMSSDLISS SLRSVQKQPL 300 LMNNISQLEY GDSAETSADL RKNVLLKPPV CLDPFIHDRN INISHGITEV SNVINDHGNF 360 DFLSGGARVV RANLCTSATS QVLDRRSHSV SGMLLHREPI VSCEVPQSSE FSTKMGSLER 420 GSFQISSAPS SESDVQISNG LNTSISRENQ LSVSNHICQD QKINGVNDLS ATLSTERMNN 480 MDGCKPPGLS LERTSPLFME QSVENDLFDI LGPQFHHLCH NAGADLVPWT DAKPESSDRD 540 VPESSIHADS APLFSSRDNE LYSGIFSDTD QLLDAVISNV NPAGKQSSDD SASCKTSLTD 600 IPATSYLCSK EMKQCGSSGV PSVLIKNESA QFIKQPCLAE NAEDGCLSQN NGMHKSQIRL 660 WIESGQSMKC ESASASNSKG LDTPSKANRK RSRPGESPKP RPKDRQLIQD RIKELREMVP 720 NGAKCSIDAL LEKTVKHMLF LQSVTKHADK LKDSTESKIL GSENGPVWKD YFEGGATWAF 780 DVGSQSMTCP IIVEDLDRPR QMLVEMICED RGIFLEIADF IKGLGLTILR GAMEARKSKI 840 WARFTVEANR DVTRMEIFLS LVRLLEPNCD SSGAAENANN VNMPLGLVCQ PVIPATGRIQ

Sequence ? help Back to Top

Protein Sequence Length: 900 aa Download sequence

MAVGDALRRL CEEVGWSYAV FWKAIGAADP VHLVWEDGYC GHASCPAGSD PSEALPTDVG  60
CAAAADTMTM CSLVNKVMAS QVHVVGEGTV GRAAFTGNHQ WIIHGTANDH GIPSEVAAEM  120
SYQFRVGIQT IAIIPVLPRG VLQLGSTGVV LENKSFMTHA KKLCSQLNNR SSMVVSSSVK  180
NSSSQQGRSR PLHGASNVQS TENRSKLFSQ FPVTCEQYNH PDTMAVSGST SLNACMNGSL  240
LKIALLNGQA VREHIVYSKP DVRFIQQVYR DGQLGSNAQS IAMSSDLISS SLRSVQKQPL  300
LMNNISQLEY GDSAETSADL RKNVLLKPPV CLDPFIHDRN INISHGITEV SNVINDHGNF  360
DFLSGGARVV RANLCTSATS QVLDRRSHSV SGMLLHREPI VSCEVPQSSE FSTKMGSLER  420
GSFQISSAPS SESDVQISNG LNTSISRENQ LSVSNHICQD QKINGVNDLS ATLSTERMNN  480
MDGCKPPGLS LERTSPLFME QSVENDLFDI LGPQFHHLCH NAGADLVPWT DAKPESSDRD  540
VPESSIHADS APLFSSRDNE LYSGIFSDTD QLLDAVISNV NPAGKQSSDD SASCKTSLTD  600
IPATSYLCSK EMKQCGSSGV PSVLIKNESA QFIKQPCLAE NAEDGCLSQN NGMHKSQIRL  660
WIESGQSMKC ESASASNSKG LDTPSKANRK RSRPGESPKP RPKDRQLIQD RIKELREMVP  720
NGAKCSIDAL LEKTVKHMLF LQSVTKHADK LKDSTESKIL GSENGPVWKD YFEGGATWAF  780
DVGSQSMTCP IIVEDLDRPR QMLVEMICED RGIFLEIADF IKGLGLTILR GAMEARKSKI  840
WARFTVEANR DVTRMEIFLS LVRLLEPNCD SSGAAENANN VNMPLGLVCQ PVIPATGRIQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	1e-54	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM11G03510.1