PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G03650.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 520aa    MW: 57650.4 Da    PI: 4.359
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G03650.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS182.33.5e-56964392354
             GRAS   2 velLlecAeavssgdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                       +lLl+ Aeav++gd  la+ + +rl +       + +++++ Rla +f ++L++r+++ ++++y+   p++ +    s ++ ++++ +e+sP+
  OGLUM11G03650.1  96 SDLLLAGAEAVEAGDSILASVAFSRLDDFlsgipENGAASSFDRLAYHFDQGLRSRMSSASTGCYQ---PEPLP----SGNMLVHQIIQELSPF 182
                      679***********************998554333334479******************9899984...55554....456778899******* PP

             GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      +kf+h+t+NqaIl+a+ g+  vH++D++i++G+QW +L+  La    g  s+R+T++   +  ++ +  ++ + L++fA++l++pf++n + ++
  OGLUM11G03650.1 183 VKFAHFTTNQAILDAIIGDMDVHVVDLNIGEGIQWSSLMSDLAR--CGGKSFRLTAITTYADCHASTHDTVVRLLSEFADSLELPFQYNSICVH 274
                      *******************************************7..4668*********887799999999999****************8555 PP

             GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.......adhnsesFlerflealeyysalfdsl 271
                      + ++  l+++  + + +++V++    ++    s+s+ +  + +L +vk+l+Pk+vv +e++       ++ +s+sF+e f+eal++++++f+s+
  OGLUM11G03650.1 275 SEDE--LHAFFEDCKGSVIVSCDTTSMYYK--SLSTLQ--SLLLVCVKKLQPKLVVTIEEDlvrigrgVSPSSASFVEFFFEALHHFTTVFESM 362
                      4444..5778777799******99777775..554444..69*******************6555443444666******************** PP

             GRAS 272 eaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                      ++ +   s     + vE ellg++i++ v + g+ r+e +      +e l   GF + +ls  + +qa++l+  ++ + + v  +
  OGLUM11G03650.1 363 ASCFIGSSyePCLRLVEMELLGPRIQDFVVKYGSVRVEANA-----SEVL--EGFMACELSACNIAQARMLVGLFN-RVFGVVFK 439
                      77776666578899*********************999888.....5555..5********************999.44555544 PP
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    
METMSYPCSP LLSFPANEES GYFIWSSQAA LHVDPCSDQQ EDLDLLDTMV LDSNELHQHD  60
APDVDVSINC DDRIFGQESV NLAAIQEELL EEDSLSDLLL AGAEAVEAGD SILASVAFSR  120
LDDFLSGIPE NGAASSFDRL AYHFDQGLRS RMSSASTGCY QPEPLPSGNM LVHQIIQELS  180
PFVKFAHFTT NQAILDAIIG DMDVHVVDLN IGEGIQWSSL MSDLARCGGK SFRLTAITTY  240
ADCHASTHDT VVRLLSEFAD SLELPFQYNS ICVHSEDELH AFFEDCKGSV IVSCDTTSMY  300
YKSLSTLQSL LLVCVKKLQP KLVVTIEEDL VRIGRGVSPS SASFVEFFFE ALHHFTTVFE  360
SMASCFIGSS YEPCLRLVEM ELLGPRIQDF VVKYGSVRVE ANASEVLEGF MACELSACNI  420
AQARMLVGLF NRVFGVVFKK ISLLMVYYIS LGKNDLREPN KVIWSSLAAG CGSHGIVVLA  480
FYAADKLLEF KPKGIETYIH PAVERAHFHK EDRMWQEYEN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-29GRAS family protein