PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G04100.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 413aa    MW: 43294.4 Da    PI: 9.0391
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G04100.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.51.3e-06194217123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      ++CpdC+++F  +++L+ H +t H
  OGLUM11G04100.1 194 FSCPDCDEVFVKPDSLELHRSTrH 217
                      89******************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    
MEASAAKEKD KGGKKMSRVG SWGSMAFYSS SSSSRSQPVS AAEGKNGGKK EKRRSSISRS  60
ITCAGSICST KESSVSSRGR GRRRRSGGGG GGDGGGGGST SSRSLMGPGY HGDSAAAVSA  120
SSSFNSVMTA ATSATATTTT TTTSSSATSP PSALSSPLSS IGGSFRAMQI RKLSGCYLHC  180
HSVLDPRTLA AVVFSCPDCD EVFVKPDSLE LHRSTRHAVS ELGADDTSRN IVEIIFQSSW  240
LKKNAPVCRI ERILKVQSSD KTIKRFEQHK EAVKEKARSA GDEAGRNPRC VADGNELLRF  300
HCTTFACSLG LAGGTALCCA SSVDGNGRIT TMATSGRAHD TAEVSPDGEK RAMLVCRVVA  360
GRVKKLHSSN SSEDHDCDSV SPCSEGVYSD LDELFVFSPR AILPCFVVIY SGY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.14e-78C2H2 family protein