PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G05230.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 444aa    MW: 45670.8 Da    PI: 7.2137
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G05230.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.21.1e-18376409134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs+Cgt++Tp+WR gpdg+ tLCnaCG++ +  +
  OGLUM11G05230.1 376 CSHCGTSETPQWRMGPDGPGTLCNACGIRSKMDR 409
                      *****************************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    
MPKPTPSSSS FLDFTGGVDG DDDDPSCPFE GLCCPDDPLD QVLNFDSSDF GHVFFESLDV  60
ELFLPRGGPS RGAGEEDSKG AVERVAFGSS AAVESELGGV GGGGAGSEVS VPGGAGGGRG  120
KDMETEALDV KPVVGVGAGG AMGAHVAGGA MGAHVAGGVG APGAFPESKQ LVPWPCAVGA  180
GASAPGAAPD NRLLALPDVR FDALTAEGAA PGGERGKTIP DSVSKNGLPT LPGVRSATPT  240
APPATPFRLE WDHAAAPSSS ATTTPSDSSL SSPPSLTSAF PRIARVFPSR TKPRRRRTLR  300
RQHWSLICPL HLVPVAAAAA AADDDAAARG KSISELNASA SAAADAPSIN DGGGGSYNRR  360
VVGRQRNRQV RKDRRCSHCG TSETPQWRMG PDGPGTLCNA CGIRSKMDRL LPEYRPSTSP  420
SFNGDEHSNR HRKVLKLREK KMRD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.12e-26GATA family protein