PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G07930.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 109aa    MW: 11586.2 Da    PI: 9.8622
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G07930.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.41.1e-1838107269
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvk 69 
                      fY++YA ++GF+vr sks  s+ ++ i++r+fvC+++g ++++++   ++k+rr+ra+ r  C a+l+v 
  OGLUM11G07930.1  38 FYCTYAARAGFRVRSSKSFASRIDDAIIMRRFVCTRQGLPSRKDTLldASKKRRNRASARAACPAMLQVA 107
                      9**************************************999988787999****************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    
MPLGAAGDED AAAVTGPSSA GEPAAGMEFA SPEEARAFYC TYAARAGFRV RSSKSFASRI  60
DDAIIMRRFV CTRQGLPSRK DTLLDASKKR RNRASARAAC PAMLQVADL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.14e-17FAR1 family protein