PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM11G11800.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 434aa MW: 44283.9 Da PI: 7.1857

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM11G11800.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.4	1.4e-09	260	307	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq OGLUM11G11800.1 260 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 307 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MAHDGFLGGG GGSFHALAAW PLPFDAAAAL HGGGWDSDPA LGELVPSPVG VGVGVHEAAL 60 MDELASRLGG VCGGGLGGGG VPSPPSSSRY ASCYSTPVGS PCKPVPAPPV PSLLAAADAM 120 IAERAARMSC LAAAGHGGGK LSRAASSQSL LAEPGAAGGV HQLPASDGSS SDAPSRKRKA 180 PGSKARGKDA ATSIAKSPEP GTKAKKCKLS ADAAGDEDTK PVAGDAGHGG NGKGKVLDAA 240 GEPPKDYIHV RARRGQATDS HSLAERVRRE KISERMKLLQ DLVPGCNKVT GKAVMLDEII 300 NYVQSLQRQV EFLSMKLSTV NPQLDFDVDK FIPKDQANDP SMPAPLSLPP PPPPLSYSPE 360 GASPGICYAS SQGTAMQSVV TSTKHLETAP TFANHHVIPV PSLDGFHSAH SQAGSCMWED 420 DLQSVVQMGF RGNT

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MAHDGFLGGG GGSFHALAAW PLPFDAAAAL HGGGWDSDPA LGELVPSPVG VGVGVHEAAL  60
MDELASRLGG VCGGGLGGGG VPSPPSSSRY ASCYSTPVGS PCKPVPAPPV PSLLAAADAM  120
IAERAARMSC LAAAGHGGGK LSRAASSQSL LAEPGAAGGV HQLPASDGSS SDAPSRKRKA  180
PGSKARGKDA ATSIAKSPEP GTKAKKCKLS ADAAGDEDTK PVAGDAGHGG NGKGKVLDAA  240
GEPPKDYIHV RARRGQATDS HSLAERVRRE KISERMKLLQ DLVPGCNKVT GKAVMLDEII  300
NYVQSLQRQV EFLSMKLSTV NPQLDFDVDK FIPKDQANDP SMPAPLSLPP PPPPLSYSPE  360
GASPGICYAS SQGTAMQSVV TSTKHLETAP TFANHHVIPV PSLDGFHSAH SQAGSCMWED  420
DLQSVVQMGF RGNT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	205	RKRKAPGSKARGKDAATSIAKSPEPGTKAK
2	176	208	RKRKAPGSKARGKDAATSIAKSPEPGTKAKKCK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-54	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM11G11800.1