PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM11G11800.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 460aa MW: 47163.2 Da PI: 7.3815

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM11G11800.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.3	1.6e-09	286	333	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq OGLUM11G11800.2 286 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 333 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MAHDGFLGGG GGSFHALAAW PLPFDAAAAL HGGGWDSDPA LGELVPSPVG VGVGVHEAAL 60 MDELASRLGG VCGGGLGGGG VPSPPSSSRY ASCYSTPVGS PCKPVPAPPV PSLLAAADAM 120 IAERAARMSC LAAAGHGGGK LSRAASSQSL LAEPGAAGGV HQLPASDGSS SDAPSRKRKA 180 PGSKARGKDA ATSIAKVLPL LSASPLQSQR RTSPETMVNF PQSPEPGTKA KKCKLSADAA 240 GDEDTKPVAG DAGHGGNGKG KVLDAAGEPP KDYIHVRARR GQATDSHSLA ERVRREKISE 300 RMKLLQDLVP GCNKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLSTVNPQL DFDVDKFIPK 360 DQANDPSMPA PLSLPPPPPP LSYSPEGASP GICYASSQGT AMQSVVTSTK HLETAPTFAN 420 HHVIPVPSLD GFHSAHSQAG SCMWEDDLQS VVQMGFRGNT

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MAHDGFLGGG GGSFHALAAW PLPFDAAAAL HGGGWDSDPA LGELVPSPVG VGVGVHEAAL  60
MDELASRLGG VCGGGLGGGG VPSPPSSSRY ASCYSTPVGS PCKPVPAPPV PSLLAAADAM  120
IAERAARMSC LAAAGHGGGK LSRAASSQSL LAEPGAAGGV HQLPASDGSS SDAPSRKRKA  180
PGSKARGKDA ATSIAKVLPL LSASPLQSQR RTSPETMVNF PQSPEPGTKA KKCKLSADAA  240
GDEDTKPVAG DAGHGGNGKG KVLDAAGEPP KDYIHVRARR GQATDSHSLA ERVRREKISE  300
RMKLLQDLVP GCNKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLSTVNPQL DFDVDKFIPK  360
DQANDPSMPA PLSLPPPPPP LSYSPEGASP GICYASSQGT AMQSVVTSTK HLETAPTFAN  420
HHVIPVPSLD GFHSAHSQAG SCMWEDDLQS VVQMGFRGNT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	3e-54	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM11G11800.2