PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM11G11800.3

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 492aa MW: 50494.1 Da PI: 7.2422

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM11G11800.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.5	3.6e-06	325	365	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR++i +++ L++l+P + +k Ka +L + ++Y++sLq OGLUM11G11800.3 325 VRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 365 6****************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MAHDGFLGGG GGSFHALAAW PLPFDAAAAL HGGGWDSDPA LGELVPSPVG VGVGVHEAAL 60 MDELASRLGG VCGGGLGGGG VPSPPSSSRY ASCYSTPVGS PCKPVPAPPV PSLLAAADAM 120 IAERAARMSC LAAAGHGGGK LSRAASSQSL LAEPGAAGGV HQLPASDGSS SDAPSRKRKA 180 PGSKARGKDA ATSIAKVLPL LSASPLQSQR RTSPETMVNF PQSPEPGTKA KKCKLSADAA 240 GDEDTKPVAG DAGHGGNGKG KVLDAAGEPP KDYIHVRARR GQATDSHSLA ERVNAAGVYA 300 AIHNFVFSSI LAFADAIAAV FHLQVRREKI SERMKLLQDL VPGCNKVTGK AVMLDEIINY 360 VQSLQRQVEF LSMKLSTVNP QLDFDVDKFI PKDQANDPSM PAPLSLPPPP PPLSYSPEGA 420 SPGICYASSQ GTAMQSVVTS TKHLETAPTF ANHHVIPVPS LDGFHSAHSQ AGSCMWEDDL 480 QSVVQMGFRG NT

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MAHDGFLGGG GGSFHALAAW PLPFDAAAAL HGGGWDSDPA LGELVPSPVG VGVGVHEAAL  60
MDELASRLGG VCGGGLGGGG VPSPPSSSRY ASCYSTPVGS PCKPVPAPPV PSLLAAADAM  120
IAERAARMSC LAAAGHGGGK LSRAASSQSL LAEPGAAGGV HQLPASDGSS SDAPSRKRKA  180
PGSKARGKDA ATSIAKVLPL LSASPLQSQR RTSPETMVNF PQSPEPGTKA KKCKLSADAA  240
GDEDTKPVAG DAGHGGNGKG KVLDAAGEPP KDYIHVRARR GQATDSHSLA ERVNAAGVYA  300
AIHNFVFSSI LAFADAIAAV FHLQVRREKI SERMKLLQDL VPGCNKVTGK AVMLDEIINY  360
VQSLQRQVEF LSMKLSTVNP QLDFDVDKFI PKDQANDPSM PAPLSLPPPP PPLSYSPEGA  420
SPGICYASSQ GTAMQSVVTS TKHLETAPTF ANHHVIPVPS LDGFHSAHSQ AGSCMWEDDL  480
QSVVQMGFRG NT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-47	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM11G11800.3