PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM11G13820.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 341aa MW: 36012.3 Da PI: 10.6475

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM11G13820.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	43.9	6.5e-14	128	158	48	78
SEEETTT--SS--S-STTTT-------S--- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 rfh+l efD++k+sCr+rL++hn+rrrk+q+ OGLUM11G13820.2 128 RFHNLAEFDDGKKSCRKRLDGHNRRRRKPQH 158 9***************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MEWAAAATKA ASWGMAVAAA DDAGPTMLSF AGPSSSSSSP DAAAAAAAAA AALHDFSVRA 60 RPAAXVLGRR VPVGPQPVPR LPPPPQGLRG PRQDAGGRRR RPGAALLPAM QPLSLFDSAP 120 TRIRLKKRFH NLAEFDDGKK SCRKRLDGHN RRRRKPQHDA LNPRSFLPYH QANQFSVYPQ 180 TFPIADQNAD AIMRPLDRHL PFSISFSGTF REPKQFPFMQ DGGSGLGAAR HDLLRPFSSP 240 EDGANITTAR SACNGVPHGL DPECALSLLS SSLHPSPAAG ISSATAPPQF APSSFSRIAA 300 SSQAVTTAFA SDGGSVAGDH VLVPAVTYED PSQAMPFSWQ V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	156	KKSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-12	SBP family protein

Link Out ? help Back to Top
Ensembl	OGLUM11G13820.2