PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM11G13820.3

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 339aa MW: 35814.1 Da PI: 10.3009

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM11G13820.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	42.9	1.3e-13	127	156	49	78
EEETTT--SS--S-STTTT-------S--- CS SBP 49 fhelsefDeekrsCrrrLakhnerrrkkqa 78 fh+l efD++k+sCr+rL++hn+rrrk+q+ OGLUM11G13820.3 127 FHNLAEFDDGKKSCRKRLDGHNRRRRKPQH 156 9**************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
MEWAAAATKA ASWGMAVAAA DDAGPTMLSF AGPSSSSSSP DAAAAAAAAA AALHDFSVRA 60 RPAAXVLGRR VPVGPQPVPR LPPPPQGLRG PRQDAGGRRR RPGAALLPAM QPYRFSVHVP 120 NMLRAIFHNL AEFDDGKKSC RKRLDGHNRR RRKPQHDALN PRSFLPYHQA NQFSVYPQTF 180 PIADQNADAI MRPLDRHLPF SISFSGTFRE PKQFPFMQDG GSGLGAARHD LLRPFSSPED 240 GANITTARSA CNGVPHGLDP ECALSLLSSS LHPSPAAGIS SATAPPQFAP SSFSRIAASS 300 QAVTTAFASD GGSVAGDHVL VPAVTYEDPS QAMPFSWQV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	154	KKSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	6e-12	SBP family protein

Link Out ? help Back to Top
Ensembl	OGLUM11G13820.3