PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G13920.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 113aa    MW: 13338.2 Da    PI: 9.1237
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G13920.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS58.31.6e-181102239361
             GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                      +vv+eqea+hn++ ++erf+eal+yy+             s e + vEr llg+ei+n+      +    he+le+W +rle aGF+ +pls++
  OGLUM11G13920.1   1 MVVTEQEASHNAALLAERFVEALNYYAR-----------GSVEHTRVERWLLGEEIMNI------W----HERLERWVRRLEGAGFGRIPLSYY 73 
                      79************************74...........4567779************8......4....89999******************* PP

             GRAS 333 aakqaklllrkvksdgyrveeesgslvlg 361
                      a  qa+++ +  + dg++v ee+g ++l 
  OGLUM11G13920.1  74 ALLQARRVAQGLGCDGFKVREEKGNFFLF 102
                      ************************99873 PP
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    
MVVTEQEASH NAALLAERFV EALNYYARGS VEHTRVERWL LGEEIMNIWH ERLERWVRRL  60
EGAGFGRIPL SYYALLQARR VAQGLGCDGF KVREEKGNFF LFFVSTWRGR RFD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-31GRAS family protein