PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G14710.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 851aa    MW: 93791.4 Da    PI: 6.7899
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G14710.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.81e-23147248199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F   + +
  OGLUM11G14710.1 147 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RGE 237
                      99*****************************7333.34459************************************************..449 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++el+v+v+r+
  OGLUM11G14710.1 238 NGELRVGVRRA 248
                      999*****996 PP
2Auxin_resp116.32.6e-38273355183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha++t+++F+v+Y+Pr+s++eFvv++++++++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg+ d+dp  Wp+SkWrsLk
  OGLUM11G14710.1 273 AWHAVNTGTMFTVYYKPRTSPAEFVVPYDRYMESLKRNYSIGMRFKMRFEGEEAPEQRFTGTIVGMGDSDPAGWPESKWRSLK 355
                      89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    
MATAEVGGGG GEGDAAAAAV ARAGGGGGGG GGEDALFTEL WSACAGPLVT VPRVGEKVFY  60
FPQGHIEQVE ASTNQVGEQR MQLYNLPWKI LCEVMNVELK AEPDTDEVYA QLTLLPESKQ  120
QEDNGSTEEE VPSAPAAGHV RPRVHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSR  180
QPPTQELVAK DLHGVEWRFR HIFRGQPRRH LLQSGWSVFV SAKRLVAGDA FIFLRGENGE  240
LRVGVRRAMR QQTNVPSSVI SSHSMHLGVL ATAWHAVNTG TMFTVYYKPR TSPAEFVVPY  300
DRYMESLKRN YSIGMRFKMR FEGEEAPEQR FTGTIVGMGD SDPAGWPESK WRSLKVRWDE  360
ASSIPRPERV SPWQIEPAVS PPPVNPLPVP RTKRLRPNAT ALPADSSAIA KEAATKVVVE  420
SEPNGTQRTF QTQENATPKS GFSNSSELES AQKSIMCPSG FDREKNNTPI QWKLGSDGRM  480
QMSKPESYSE MLSGFQPPKD VQTPQGFCSL PEQITAGHSN FWHTVNAQYQ DQQSNHNMFP  540
SSWSFMPPNT RLGLNKQNYS MIQEAGVLSQ RPGNTKFGNG VYAALPGRGT EKYSGGWFGH  600
MIPNSHMDDT QPRLIKPKPL VVAHGDVQKA KGASCKLFGI HLDSPAKSEP LKSPSSVVYD  660
GTPQTPGATE WCRPDVTEVE KCSDPSKAMK PLDTPQPDSV PEKPSSQQAS RNMSCKSQGV  720
STRSCKKVHK QGIALGRSVD LTKFNGYEEL IAELDDMFDF NGELKGPKKE WMVVYTDNEG  780
DMMLVGDDPW IEFCDMVHKI FIYTREEVQR MNPGTLNSRS EDSHANSMER GSVGREMRGC  840
LSTSSLNSEN C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein