PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM11G15900.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YC

Protein Properties

Length: 258aa MW: 28268.5 Da PI: 5.1115

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM11G15900.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59.8	6e-19	7	86	19	98
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++P arikki++adedv +i+ +Pvl+s+a elf+ +l r++ + ++ +tl+ ++++v r fdfl+++v + OGLUM11G15900.1 7 TRFPAARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRTYEITLQSGAKTLNSFHLKQCVRRYSSFDFLTEVVNK 86 579************************************************************************99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence
MRKKLGTRFP AARIKKIMQA DEDVGKIALA VPVLVSRALE LFLQDLIDRT YEITLQSGAK 60 TLNSFHLKQC VRRYSSFDFL TEVVNKVPDL GGADSCGDDR ALPRRRKALP NGSDPENEES 120 RSSKMAIRSA NISPRGRGRG RGRGRGRPPT KRKEVGYVQF EDESSMFADQ GEALPGEETV 180 PETIHGTESV PPSTHPPAEA PSAAEIPAPN PKVEEAKNDD HQPDWPMPDA IGNIGVGPSG 240 FGHLTVQVDE DEDYDNED

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	107	PRRRK
2	135	144	RGRGRGRGRG
3	135	145	RGRGRGRGRGR
4	137	146	RGRGRGRGRG
5	137	147	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-53	NF-YC family protein

Link Out ? help Back to Top
Ensembl	OGLUM11G15900.1