PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G17080.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 241aa    MW: 26687.5 Da    PI: 4.902
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G17080.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA41.32.1e-13190224133
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                      C+nCg ++  Tp++R++p+g+k+ CnaCGl++   
  OGLUM11G17080.1 190 CTNCGESSdaTPMMRHAPNGTKSFCNACGLMWENS 224
                      ********************************876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MDNPTPSSSS GGGGAAAAAN ASSDEHRKTS PATAADFFDE EHTFDDILLP VDLFDFTHGL  60
DAGDGCYVDD QAAIGQKPLS PAPEPAAEQQ PSPAPEHGDD ERLVMYYQGQ EYVFDSVQPQ  120
KIENIFHHLN GQEMIPQSIR PQPTNLVRPI TVPEDFDRFA ALTRYREKKR NIKFIKKADY  180
SARKEVALRC TNCGESSDAT PMMRHAPNGT KSFCNACGLM WENSRKIRKI RNPTSGEQED  240
Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.25e-26GATA family protein