PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G18550.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 94aa    MW: 10362.8 Da    PI: 7.3656
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G18550.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.7e-0917561554
                     HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     ++ + +++L+ +lP++ ++ + K s ae+L++A++YI+ L
  OGLUM11G18550.1 17 QMAELISKLQAVLPTRGGEANAKASSAEVLQEACRYIRRL 56
                     78899**********88*********************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    
MSSSRRSRTS SRLTDEQMAE LISKLQAVLP TRGGEANAKA SSAEVLQEAC RYIRRLHREA  60
DALSERLAEL LLLQPSDLAI NGADVPDLIR SLLM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.12e-10bHLH family protein