PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G22950.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 245aa    MW: 27190 Da    PI: 7.2211
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G22950.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-055375123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C + F++   L  H+++H
  OGLUM11G22950.1 53 YTCSFCQREFRSAQALGGHMNVH 75
                     9********************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MEEQRGEEEW VMWGSAGRRR IIRQSASWEE QAFARDAAAN ANLGGCVWPP RFYTCSFCQR  60
EFRSAQALGG HMNVHRRDRA RLRQRQNSSS SSPSHQEEEA EAPQDQQAGP YYTSFSKPST  120
TSTDNTTCSN DILLLARDQE TIKKRVPRQQ VQVVADQDED EPAGRRYKRR RLGLVDQLPS  180
SCEGGDHHHQ VLIITPTTAA ASPSSIIASA SALVVGDQQH QQAGSVLDLE LRLGTSTPPK  240
AVVHA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11724GRRRIIRQ
2168172KRRRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-15C2H2 family protein