PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G00350.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 158aa MW: 17490.9 Da PI: 6.6534

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G00350.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.5	5.6e-44	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +Ca+Ck+lrr+C+++Cv+apyfpae++++fa+vh++FGasnv+k+l ++p+ +r+da+sslvyeA+ar+rdPvyG+v+ i+ lqqq++ql+ +l OGLUM12G00350.1 11 PCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVSSLVYEANARMRDPVYGCVAAISFLQQQVSQLQMQL 104 7********************************************************************************************* PP DUF260 95 allkee 100 al+++e OGLUM12G00350.1 105 ALANAE 110 *99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence
MAGSGSGSGT PCASCKLLRR RCTSECVFAP YFPAEEAQRF AMVHRVFGAS NVSKMLLDVP 60 PPQRPDAVSS LVYEANARMR DPVYGCVAAI SFLQQQVSQL QMQLALANAE TAALQLQLQQ 120 QHQDQDDHQQ QPCILENAAA HHQLMLQEAF LKKESMWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	5e-44	LBD family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G00350.1