PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G00790.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 184aa MW: 20447.3 Da PI: 11.5296

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G00790.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	87.7	2.6e-27	15	143	2	121
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssasec.eaesssssasnsssgka 90 ag kd+hsk+ T++g+RdRRvRls++ a+ f+d+qd+LG d++sk+ieWL++ ai++l ++ +++a + + ++++ s++++s+++a OGLUM12G00790.1 15 AGEKDKHSKVVTSRGLRDRRVRLSVPMAIAFYDIQDRLGIDQPSKAIEWLIR----AIDALLSLdcslVFPNAAQLlTRWRRRPSSGQPSEEQA 104 789************************************************7....78888888666644444444666666666666666644 PP TCP 91 aksaakskksqksaasalnlakesr........akarar 121 ++ +a+ s++++ +++ + ++ ak rar OGLUM12G00790.1 105 CTRKATVAASPRKSGEKRRKTRSGCaarraeriAKLRAR 143 444444444444443333333333311111112444444 PP

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence
MAAAWWTSRV ARVVAGEKDK HSKVVTSRGL RDRRVRLSVP MAIAFYDIQD RLGIDQPSKA 60 IEWLIRAIDA LLSLDCSLVF PNAAQLLTRW RRRPSSGQPS EEQACTRKAT VAASPRKSGE 120 KRRKTRSGCA ARRAERIAKL RARREGWMPR REASTSAASG GGSTGEIEED ELKHGGERSN 180 QVPI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30210.2	5e-25	TCP family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G00790.1