PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G01380.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 168aa    MW: 18631.7 Da    PI: 7.947
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G01380.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY34.44.2e-1110522159
                     -EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
             WRKY 21 prsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59
                     ++ YYrCt++   +Cp++k+v+++ ++dp ++ +tY ++H+++
  OGLUM12G01380.1 10 TKFYYRCTYKndmKCPATKQVQQKdTNDPPLFSVTYFNHHTCN 52
                     577******99999*******8761679*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    
MQDSAGFGVT KFYYRCTYKN DMKCPATKQV QQKDTNDPPL FSVTYFNHHT CNSSPKIVGS  60
TPDSTVQSRK AISICFNSHG KTGELPTFLS PSASLLSPSM QPYSSNQQPD MNTYSRQFHW  120
ADTSSSTSYA PVKMEADDYA EASASPSTTG ALSRTLLPID YRYFFVVP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-10WRKY family protein