PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G01990.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 311aa    MW: 34010.1 Da    PI: 5.794
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G01990.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  OGLUM12G01990.1 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding46.58.4e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+ E+ ++v++  +lG++ W++Ia++++  Rt++++k++w+++l
  OGLUM12G01990.1  67 RGNFTAHEEGIIVHLQSLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MGRPPCCDKE GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PINTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TAHEEGIIVH LQSLLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLAAAA  120
NSTSSSNRHP IFADATFPSA AGGSHTVSSN SDVTQMAAIA RRSPFADCPS SSYASSMDNI  180
SKLLDGFMKT NSPSPPPPPL QHYDGGYYDD VKPAVDVGGN PLLSSFDCMS GADLDCCFDV  240
HQQHQQQQPA SFMEYGGYGG GYGDESMQQL MNQAAPPLSS IEKWLFDEAA AEQVADLMDL  300
SDGCCSVPMM F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.11e-86MYB family protein