PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G02990.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 1201aa    MW: 131913 Da    PI: 7.7359
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G02990.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS303.55e-93364836374
             GRAS   6 lecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshl 96 
                      lecA +v++g +e+a+++Lar   l a+ +g  p +Rla  ++  La+rl+r v+ + +al  ps     +  ++ aa++ f+e+sP++k++++
  OGLUM12G02990.1  36 LECAAHVETGPMEKATRCLARATGLaAAAAGdGPQKRLAEAMVDCLARRLLRPVQAITDALiDPSVYL--DRRSVRAARRGFFELSPFPKVAFV 127
                      69********************9996566665799**********************99995444443..34555578899************* PP

             GRAS  97 taNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                      + N+aI+eave+e+ vH++ ++   +q+ QW+ Ll++L  Rpegpp  +R+T+v++    + e l +++e L++ Aeel+++f+f+  v+ +le
  OGLUM12G02990.1 128 VGNRAIVEAVENESLVHVVGMSgpFTQPCQWIQLLHELRRRPEGPPrVVRLTVVHD----DGELLAKMAEVLSDEAEELDMEFQFHG-VVGQLE 216
                      *********************86679****************9988789*******....***************************.7999** PP

             GRAS 188 dleleeL....rvkpgEalaVnlvlqlhrll............................................................... 214
                      dl++ +L    ++k+gEal+V++ lqlhrll                                                               
  OGLUM12G02990.1 217 DLDFGNLrdvlEIKSGEALVVSCTLQLHRLLsadddamyssrsahlnqmasiaqlqqmavsscppstggggsvqykdddddpyrspatpltfvs 310
                      **9988766668999******************************************************************************* PP

             GRAS 215 ....desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres........eerikvErellgreiv 295
                            +++++ +  ++L++v+ lsPk+vvv+eq+adhn+ sF +rf+eal++y+a+fdsl +a ++++s        +er+ vEr+++g+ei+
  OGLUM12G02990.1 311 ppasTPHLQMPAALANFLSAVRALSPKIVVVAEQDADHNGVSFRKRFCEALHHYAAVFDSLdDAAAATTSaashlwspDERAQVERVVVGEEIK 404
                      **87555555557778*********************************************766666666788899999*************** PP

             GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       v+   ga+rrerh +l++W +r+e+aGF+ vpls+ a  + + ++r+++ +  +  e  g+l+l+W++rpL+s+SaWr
  OGLUM12G02990.1 405 GVLLRDGAHRRERHDRLRQWAARMEMAGFTGVPLSYAAIRKGNDMVRRCGLRRCENRECGGCLLLCWSSRPLYSISAWR 483
                      **************************************************887888899*******************8 PP
2GRAS203.61.1e-62629934111371
             GRAS 111 rvHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.... 198
                       vHi+D++ s  ++ QW+ Ll+ +  Rp+g+p+l +T++++    +++ l e+++ L+k Ae+l+v+f+f   v  rle+l++++Lr       
  OGLUM12G02990.1 629 VVHIVDLSCSaaHPWQWLKLLDDFHGRPGGAPELYLTVLHD----DNDFLAEMQSLLSKKAESLEVSFRFIS-VIGRLETLDFSNLRSTFqikf 717
                      59*****8653389***************************....9**************************.799**********54444555 PP

             GRAS 199 gEalaVnlvlqlhrll.........................................desvsleserdevLklvkslsPkvvvvveqeadhnse 251
                      g a+a++++lq+hrll                                           s  +++   ++L++++ l+P+++v++eq+adhn+ 
  OGLUM12G02990.1 718 GVAVAISCALQMHRLLlvddnlsstsiaqlqkmanftqpkqmassvcspastlnylqTPSPRTPKLLARLLSAIRALKPNIMVIMEQDADHNAL 811
                      *******************************************************98666777778899************************* PP

             GRAS 252 sFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                       F +rf e l+yy+alfd+++a ++++    +er  vEr++l++ei+n++ ceg +r erhe+l +W + +ee+GF++v+ls +a  + k  l 
  OGLUM12G02990.1 812 LFRDRFNEVLNYYAALFDCFHAVAAANPgrtDERLRVERMILREEIKNILVCEGVHRHERHERLDQWAMHMEESGFHNVQLSFSAIREGKENLL 905
                      ********************77654444456*************************************************************** PP

             GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvS 371
                       ++ +  + +e++g+l+l W + +L+s+S
  OGLUM12G02990.1 906 SFGLKNCQNKEDRGCLLLSWGSTNLYSIS 934
                      ***888*********************99 PP
3GRAS147.71.1e-4598711642182
             GRAS    2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92  
                       + lL++cA  vs+g++ +a+ +L+++ +las d+  ++qRlaa+f+ ALa++l++  ++l++al +s++s +    +  a++  ++v P+lk
  OGLUM12G02990.1  987 IGLLYQCAAEVSAGSFDRANLCLEHITQLASLDApHALQRLAAVFADALARKLLNLIPGLSRALLSSANSADA-HLVPVARRHMFDVLPFLK 1077
                       679*******************************9*****************************888887544.44446778899******* PP

             GRAS   93 fshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 
                       +++lt+N+aIlea+ege+ vH++Df+  + +++QW+aL++a+  R+egpp+lRiT+v++    ske l +++  L+k Ae++++ f+f   +
  OGLUM12G02990.1 1078 LAYLTTNHAILEAMEGERFVHVVDFSgpAANPVQWIALFHAFRGRREGPPHLRITAVHD----SKEFLANMAAVLSKEAEAFDIAFQFXS-H 1164
                       *************************966899****************************....9************************87.4 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1201 aa     Download sequence    
MFSGTDSSSP ELSLCSPYGP WTQGRGPTEE LGLAPLECAA HVETGPMEKA TRCLARATGL  60
AAAAAGDGPQ KRLAEAMVDC LARRLLRPVQ AITDALIDPS VYLDRRSVRA ARRGFFELSP  120
FPKVAFVVGN RAIVEAVENE SLVHVVGMSG PFTQPCQWIQ LLHELRRRPE GPPRVVRLTV  180
VHDDGELLAK MAEVLSDEAE ELDMEFQFHG VVGQLEDLDF GNLRDVLEIK SGEALVVSCT  240
LQLHRLLSAD DDAMYSSRSA HLNQMASIAQ LQQMAVSSCP PSTGGGGSVQ YKDDDDDPYR  300
SPATPLTFVS PPASTPHLQM PAALANFLSA VRALSPKIVV VAEQDADHNG VSFRKRFCEA  360
LHHYAAVFDS LDDAAAATTS AASHLWSPDE RAQVERVVVG EEIKGVLLRD GAHRRERHDR  420
LRQWAARMEM AGFTGVPLSY AAIRKGNDMV RRCGLRRCEN RECGGCLLLC WSSRPLYSIS  480
AWRPAASGGA GSGSERSEYI HVVIFGPNLT MSRRATSYGL QAPKAQSTIR KGFGHLLLLP  540
SPHTDPPCRV GRSAAAAAMS ASLHRPALAS LLQIEAGGCG VLGVFAPGPR LPCRGYHPCR  600
SSSTLGSASL TPRRRHISPP GLRIRDVLVV HIVDLSCSAA HPWQWLKLLD DFHGRPGGAP  660
ELYLTVLHDD NDFLAEMQSL LSKKAESLEV SFRFISVIGR LETLDFSNLR STFQIKFGVA  720
VAISCALQMH RLLLVDDNLS STSIAQLQKM ANFTQPKQMA SSVCSPASTL NYLQTPSPRT  780
PKLLARLLSA IRALKPNIMV IMEQDADHNA LLFRDRFNEV LNYYAALFDC FHAVAAANPG  840
RTDERLRVER MILREEIKNI LVCEGVHRHE RHERLDQWAM HMEESGFHNV QLSFSAIREG  900
KENLLSFGLK NCQNKEDRGC LLLSWGSTNL YSISLRLCCT DRGMFQDDML SSATSSPASS  960
VYSPSPSPSN GSWVQELSHD QQSVRLIGLL YQCAAEVSAG SFDRANLCLE HITQLASLDA  1020
PHALQRLAAV FADALARKLL NLIPGLSRAL LSSANSADAH LVPVARRHMF DVLPFLKLAY  1080
LTTNHAILEA MEGERFVHVV DFSGPAANPV QWIALFHAFR GRREGPPHLR ITAVHDSKEF  1140
LANMAAVLSK EAEAFDIAFQ FXSHAAGLRG RMRKYDFRMR LCRPHAKIVI FADLLAHAFK  1200
A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.16e-71GRAS family protein