PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G04960.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GATA

Protein Properties

Length: 412aa MW: 43361.7 Da PI: 10.7694

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G04960.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	45.8	8.5e-15	149	181	1	33
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C nC + +Tp+WR+gp g +tLCnaCG++ r OGLUM12G04960.1 149 CLNCDAVETPQWRSGPMGRSTLCNACGVRLRAV 181 99**************************99865 PP
2	GATA	56.8	3e-18	277	311	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+t+Tp+WR+gp g tLCnaCG++yr +l OGLUM12G04960.1 277 CVHCGSTETPQWREGPTGRGTLCNACGVRYRQGRL 311 *******************************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MAAVEGGIGE PPGLARERRP RLRRSVAATG DMDGDGDVGG GGGGGGVRYV LALPAMASLA 60 VLIAHLDAAV PVPRRPRSYL PRAVPMAWWA FRLPVFRPPP PPPPPPAKNP VKEEEGVARV 120 VVVVAPPPPP VDPGEEEAGK RAAKRARRCL NCDAVETPQW RSGPMGRSTL CNACGVRLRA 180 VGSLPEHRAP AARTTTAAPA SPPDSPIWTP GHKPPSSSPD IYLVRRTPKL PVTRPPRTKQ 240 APPTAPAPAP PPPPPQPASP KTKTKAKAKK PKRKRSCVHC GSTETPQWRE GPTGRGTLCN 300 ACGVRYRQGR LLPEYRPKGS PTFSPSVHAA NHRQVLELRR QQRQSTNPST PPPPPVSAAE 360 PIPDEQKEEV VSVPVAAAAP ATDGGAASSL DALLLDGPSA PLIVDGDDFL VS

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MAAVEGGIGE PPGLARERRP RLRRSVAATG DMDGDGDVGG GGGGGGVRYV LALPAMASLA  60
VLIAHLDAAV PVPRRPRSYL PRAVPMAWWA FRLPVFRPPP PPPPPPAKNP VKEEEGVARV  120
VVVVAPPPPP VDPGEEEAGK RAAKRARRCL NCDAVETPQW RSGPMGRSTL CNACGVRLRA  180
VGSLPEHRAP AARTTTAAPA SPPDSPIWTP GHKPPSSSPD IYLVRRTPKL PVTRPPRTKQ  240
APPTAPAPAP PPPPPQPASP KTKTKAKAKK PKRKRSCVHC GSTETPQWRE GPTGRGTLCN  300
ACGVRYRQGR LLPEYRPKGS PTFSPSVHAA NHRQVLELRR QQRQSTNPST PPPPPVSAAE  360
PIPDEQKEEV VSVPVAAAAP ATDGGAASSL DALLLDGPSA PLIVDGDDFL VS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08010.2	4e-23	GATA family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G04960.1