PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G05080.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 468aa MW: 50898 Da PI: 5.5831

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G05080.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.8	4.9e-07	233	254	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H OGLUM12G05080.1 233 FCGICGKGFKRDANLRMHMRGH 254 6*******************98 PP
2	zf-C2H2	10.7	0.0017	322	345	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 ++C+ Cg k+Fs +Lk+H + + OGLUM12G05080.1 322 HVCGRCGaKRFSVMADLKTHEKHC 345 79******************9876 PP
3	zf-C2H2	10.9	0.0014	354	368	6	20
TTEEESSHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHi 20 Cg+sFsrk+ L H OGLUM12G05080.1 354 CGTSFSRKDKLFAHV 368 **************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MDRDQMMNTM RDQAANLTSM NPLFYPFMAD DALLGMAPPP PQQLLPSVSI QHMDWSPDTM 60 LDNLTFIEEK IRQVKDVIRS MAGRRASSSS AATPEQQLVN ADLTCLIVQL ISTAGSLLPS 120 LKNSSFLSRT TPPPAAPAGA AQAVSLAAGE SSSSARNNET NREDEEEQMG SPDYDELFKG 180 WTNGGAMDEC VGAAGDEQDA RENPAAAAAA AEEEKYEVLQ LEEDEILAPH THFCGICGKG 240 FKRDANLRMH MRGHGDEYKS AAALAKPPPP PEGEEQPPQP ERRYSCPHAG CKRNRMHASF 300 QPLKTILCVK NHYKRSHCEK RHVCGRCGAK RFSVMADLKT HEKHCGRDRW LCSCGTSFSR 360 KDKLFAHVAL FQGHAPALPP PPPPPTSGRR RHKQEEPEFT WGGGGGDEFL DVKGIAGVGS 420 GSGGGDEFFS AGSFGAMDFG FEQLDASLAM LLPSEQFAGD HQEENGDK

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MDRDQMMNTM RDQAANLTSM NPLFYPFMAD DALLGMAPPP PQQLLPSVSI QHMDWSPDTM  60
LDNLTFIEEK IRQVKDVIRS MAGRRASSSS AATPEQQLVN ADLTCLIVQL ISTAGSLLPS  120
LKNSSFLSRT TPPPAAPAGA AQAVSLAAGE SSSSARNNET NREDEEEQMG SPDYDELFKG  180
WTNGGAMDEC VGAAGDEQDA RENPAAAAAA AEEEKYEVLQ LEEDEILAPH THFCGICGKG  240
FKRDANLRMH MRGHGDEYKS AAALAKPPPP PEGEEQPPQP ERRYSCPHAG CKRNRMHASF  300
QPLKTILCVK NHYKRSHCEK RHVCGRCGAK RFSVMADLKT HEKHCGRDRW LCSCGTSFSR  360
KDKLFAHVAL FQGHAPALPP PPPPPTSGRR RHKQEEPEFT WGGGGGDEFL DVKGIAGVGS  420
GSGGGDEFFS AGSFGAMDFG FEQLDASLAM LLPSEQFAGD HQEENGDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	2e-79	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G05080.1