PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G06360.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 129aa    MW: 13813.1 Da    PI: 9.7917
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G06360.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.26.5e-1173981843
                     HHHHHHHHHHHHHHT-EEEEEEE-TT CS
           SRF-TF 18 ngilKKAeELSvLCdaevaviifsst 43
                     ng+lKKA+ELSvL daev  iifs++
  OGLUM12G06360.1 73 NGLLKKAYELSVLYDAEVTPIIFSNR 98
                     8***********************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    
MTSPCSKSPW LPQLLPPATL PRQAQHAPWQ VRKPLVAPGK HRRPTPAACL ETVVLFDGPW  60
CAGTFAAAGN GVNGLLKKAY ELSVLYDAEV TPIIFSNRAM ASAMTNSESS NIITMVLREA  120
ATMVPKVSA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.28e-09MIKC_MADS family protein