PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G07180.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 354aa    MW: 37595.3 Da    PI: 8.65
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G07180.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.16.4e-3174128358
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                      ++rY+eClkNhAa++Gg a+DGCgEfmp  geeg+ +al+C+ACgCHRnFHR+e +
  OGLUM12G07180.1  74 AARYRECLKNHAAAIGGSATDGCGEFMPG-GEEGSLDALRCSACGCHRNFHRKELD 128
                      689*************************9.999********************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    
MDLSGAQGEL PLPMHAAASP YLGLHHDHHH HHGGGGGGGG GGGMNGRHMS PPTPPAAAEE  60
SKAVVVVSSS ATAAARYREC LKNHAAAIGG SATDGCGEFM PGGEEGSLDA LRCSACGCHR  120
NFHRKELDAA AAPPLHHHHH QLLGVGAHPR GHGHHHHHLL VAALPPPTRM VMPLSAMHTS  180
ESDDAAARPG GGAAARKRFR TKFTAEQKAR MLGFAEEVGW RLQKLEDAVV QRFCQEVGVK  240
RRVLKVWMHN NKHTLARRHL HPSSAAAGDD DDGAPPPHPD PGGASSPPPP HHLRLHELIG  300
DHYGSGAPEE LKKLDFFWER RGGGGGNPLR NKMKIHLASA STSIRLQLSP TETL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.15e-48ZF-HD family protein