PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G07210.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

DBB

Protein Properties

Length: 214aa MW: 21968.2 Da PI: 4.7366

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G07210.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.1	1.3e-06	5	45	6	40
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ +e+ e+ C ++ lC+ C + H+ H +v OGLUM12G07210.1 5 CDACEQAEAAVLCCADEAALCRRCDAAVHSAnrlagkHPRV 45 *****************************656777777766 PP
2	zf-B_box	24.7	5e-08	64	99	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..H 37 ++C+ ++ek +fC +++ llC++C + H H OGLUM12G07210.1 64 PTCDICQEKTGYFFCLEDRALLCRSCDVDVHTAtaH 99 79**************************99955663 PP

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence
MKIGCDACEQ AEAAVLCCAD EAALCRRCDA AVHSANRLAG KHPRVALLLP SSSSAAAGDD 60 DHHPTCDICQ EKTGYFFCLE DRALLCRSCD VDVHTATAHA AAHRRFLITG VRIGGSVDAA 120 AAADVIVSPT SSSIAPAGSA SSNHAVAGAG AAGNNNGRSP APVRFSGGDG GVEPEQQWPW 180 SDVFAADDDD DVSAAMEQCY YHGISEPHSS SLTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	1e-34	DBB family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G07210.1