PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G08360.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 944aa MW: 102937 Da PI: 4.7368

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G08360.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.6e-17	51	98	1	48
TSSS-HH.HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTte.EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+e Ed+++v+ v++lG++ W+tIa+ ++ gR +kqc++rw+++l OGLUM12G08360.1 51 KGNWTPEeEDDIIVQMVNKLGPKKWSTIAQALP-GRIGKQCRERWHNHL 98 7998725789*****************.***********97 PP
2	Myb_DNA-binding	47.3	4.8e-15	104	146	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++++G++ W+ + ++ gRt++ +k++w+ OGLUM12G08360.1 104 KEAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNAIKNHWN 146 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 944 aa Download sequence
MMTSDNGKAP EKGGEASGPS SAPQEGEISN EPQRRRPLSG RTTGPTRRST KGNWTPEEED 60 DIIVQMVNKL GPKKWSTIAQ ALPGRIGKQC RERWHNHLNP GINKEAWTQE EEITLIHAHR 120 MYGNKWAELT KFLPGRTDNA IKNHWNSSVK KKVDSYMSSG LLTQVSCLPL NEYSAHCNSS 180 PALTQQNSED SGSYAVREVE NSSVCSQSSL AKVSCSQVHN ANVALGCDLQ VNANVDNNEA 240 HDSQSSVGHE ACYTSVGAVA TAIPEVHYHV SSSNFDPDQH LQEEFAQGLN LHMSMDEVPS 300 NSSFADNPTI CSIENHERSL EPYDVAMEMP LSMLPSDSGA EQKLHFMSEA DFNSPNCLKS 360 ELWQDISLQS LLSGPDAVET DSFSRSNHQS DVYSSQADNE FLAPPYLLQT SNSSSVMEAT 420 YGQSPQMSVP PSLICSNVMT DVPSDNRSEP KEMTVSQAEM VTQSSSSSGD AEMSANPGSS 480 NGSDIPSMME RVPECADQHV TNAEEPEASI EKEPSVTPSA TADEKQDEGA LFYEPPRFPS 540 MDVPFVSCDL VTSGDLQEYS PLGIRQLMRS TMNVCTPMRL WGSPTHDESP DILLKSAAKS 600 FICTPSILKK RHRDLVSPIP DKRIEKKSGT EKDCGVSDTS SIGIQTCFIN ATKDDAVITK 660 SVLRIERSAS SKPLEKKLEF SDENKENLDN TIEQAKDGQS AGNDKHIDEQ ARGERRTATN 720 ITTTYDDLPG NLQPAGILIE HNGDDLVSPD YGKNTMKQKQ NTNMESLSVC KEGVSAKKPA 780 ELIVEKSSAC INVDYEYVNI LADTPGIKRG LESPSAWKSP WFVDMQFQGS YFVSPANGSY 840 DALGLVKQIN VQTAAALAEA REVLASGGQS ENINSDKENL ENPDAKKEPG ATTKLQAKIK 900 TEGKILDFNE CATPIRSSDK KAGSSLGRSL SSPIPSSHLL KSFR

Sequence ? help Back to Top

Protein Sequence Length: 944 aa Download sequence

MMTSDNGKAP EKGGEASGPS SAPQEGEISN EPQRRRPLSG RTTGPTRRST KGNWTPEEED  60
DIIVQMVNKL GPKKWSTIAQ ALPGRIGKQC RERWHNHLNP GINKEAWTQE EEITLIHAHR  120
MYGNKWAELT KFLPGRTDNA IKNHWNSSVK KKVDSYMSSG LLTQVSCLPL NEYSAHCNSS  180
PALTQQNSED SGSYAVREVE NSSVCSQSSL AKVSCSQVHN ANVALGCDLQ VNANVDNNEA  240
HDSQSSVGHE ACYTSVGAVA TAIPEVHYHV SSSNFDPDQH LQEEFAQGLN LHMSMDEVPS  300
NSSFADNPTI CSIENHERSL EPYDVAMEMP LSMLPSDSGA EQKLHFMSEA DFNSPNCLKS  360
ELWQDISLQS LLSGPDAVET DSFSRSNHQS DVYSSQADNE FLAPPYLLQT SNSSSVMEAT  420
YGQSPQMSVP PSLICSNVMT DVPSDNRSEP KEMTVSQAEM VTQSSSSSGD AEMSANPGSS  480
NGSDIPSMME RVPECADQHV TNAEEPEASI EKEPSVTPSA TADEKQDEGA LFYEPPRFPS  540
MDVPFVSCDL VTSGDLQEYS PLGIRQLMRS TMNVCTPMRL WGSPTHDESP DILLKSAAKS  600
FICTPSILKK RHRDLVSPIP DKRIEKKSGT EKDCGVSDTS SIGIQTCFIN ATKDDAVITK  660
SVLRIERSAS SKPLEKKLEF SDENKENLDN TIEQAKDGQS AGNDKHIDEQ ARGERRTATN  720
ITTTYDDLPG NLQPAGILIE HNGDDLVSPD YGKNTMKQKQ NTNMESLSVC KEGVSAKKPA  780
ELIVEKSSAC INVDYEYVNI LADTPGIKRG LESPSAWKSP WFVDMQFQGS YFVSPANGSY  840
DALGLVKQIN VQTAAALAEA REVLASGGQS ENINSDKENL ENPDAKKEPG ATTKLQAKIK  900
TEGKILDFNE CATPIRSSDK KAGSSLGRSL SSPIPSSHLL KSFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	1e-56	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G08360.1