PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G09840.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 1373aa MW: 152796 Da PI: 7.5874

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G09840.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00035	1254	1277	1	22
EEET..TTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt 22 ++C C++sFs++ +L H r OGLUM12G09840.1 1254 FPCDieGCDMSFSTQQDLLLHKRD 1277 789999***************985 PP
2	zf-C2H2	11.9	0.00071	1337	1363	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg++F+ s++ rH r+ H OGLUM12G09840.1 1337 YECQepGCGQTFRFVSDFSRHKRKtgH 1363 899999****************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1373 aa Download sequence
MSLQPPAVEP PEWLRTLPVA PEYHPTLAEF ADPIAYILRI EPEASRYGIC KIVPPLPRPP 60 EDDTFRRLQD AFAAAASSNG AGGDPSPTFP PTFPTRLQQV GLSARNRRAA SRRVWESGER 120 YTLEAFRAKA AEFEPPRHAA PPRNPTHLQL EALFWAACAS RPFSVEYGND MPGSAFASPD 180 ELPDAANATD VGETEWNMRV APRARGSLLR AMARDVAGVT TPMLYVAMLY SWFAWHVEDH 240 ELHSLNFLHF GKAKTWYGVP RDAMLAFEET VRVHGYADDL NAIMAFQTLN EKTTVLSPEV 300 LLSAGVPCCR LVQKAGEFVI TFPGAYHSGF SHGFNCGEAS NIATPHWLQV AKEAAIRRAS 360 TNCGPMVSHY QLLYELALSL RPREPKNFYS VPRSSRLRDK NKNEGDIMVK ENFVGSVAEN 420 NNLLSVLLDK NYCIIVPNTD FFVPSFPVAL ESEATVKQRF TAGPCSISQQ GAENMAVDHV 480 AVDKVTDIQD MSGSLYPCET SLVGCSNRKL YETKYGQRDA AALCLSTSEI QSRGIDKARS 540 HPAGGILDQG RLPCVQCGIL SFACVAIIQP REAAVQFIMS KECISSSAKQ GGIGASDDTS 600 NWIDQSHEIS PPPGPASGTD DNVKHTVSLA HVSDRCRELY ASNTDGCTSA LGLLASAYDS 660 SDSDDETTED VLKHSKKNDS VNQSMDTQIL ETSASYSSTV RCQKTNSHSH EEECEARATS 720 LMKPVSHNSR PISQSNRDTD IDQFIELGKS GTQCSGYLDL VDDLTTSVLK SSSDTCVSAA 780 KASMDPDVLT MLRYNKDSCR MHVFCLEHAL ETWTQLQQIG GANIMLLCHP EYPRAESAAK 840 VIAEELGIKH DWKDITFKEA TEEDVKKIRL ALQDEDAEPT GSDWAVKMGI NIYYSAKQSK 900 SPLYSKQIPY NSIIYKAFGQ ENPDSLTDYG CQKSGSTKKK VAGWWCGKVW MSNQVHPLLA 960 REREEQNSSV VYGKAMFTTI SHGKVQDEAS TRCNTSNRTP SKRTSRRKKG VSAEKSKPKN 1020 KRSTASDEAS MHCSGLGMNS GVIHDQTENS DDYDKHGNGD EIEEGTNPQK YQQRKLQNVT 1080 RKSSSKKRKD EKRTDSFHEL YDEDNGVDYW LNMGSGHDAT LGNSQQQSPD PVKVKSGGKL 1140 QGKRKSSKYK SNDDLLNEEN KLQKMNKKSS SKKQKNDKIN RQLQEDQTED DHMDHLVDVA 1200 VADEVTLDNE DKITEDKIDD VKVKSRGKSQ NGKRKGSKHQ ASDGLRAGNK VAKFPCDIEG 1260 CDMSFSTQQD LLLHKRDICP VKGCKKKFFC HKYLLQHRKV HIDERPLKCT WKGCKKAFKW 1320 PWARTEHMRV HTGVRPYECQ EPGCGQTFRF VSDFSRHKRK TGHSSDKRRK NST

Sequence ? help Back to Top

Protein Sequence Length: 1373 aa Download sequence

MSLQPPAVEP PEWLRTLPVA PEYHPTLAEF ADPIAYILRI EPEASRYGIC KIVPPLPRPP  60
EDDTFRRLQD AFAAAASSNG AGGDPSPTFP PTFPTRLQQV GLSARNRRAA SRRVWESGER  120
YTLEAFRAKA AEFEPPRHAA PPRNPTHLQL EALFWAACAS RPFSVEYGND MPGSAFASPD  180
ELPDAANATD VGETEWNMRV APRARGSLLR AMARDVAGVT TPMLYVAMLY SWFAWHVEDH  240
ELHSLNFLHF GKAKTWYGVP RDAMLAFEET VRVHGYADDL NAIMAFQTLN EKTTVLSPEV  300
LLSAGVPCCR LVQKAGEFVI TFPGAYHSGF SHGFNCGEAS NIATPHWLQV AKEAAIRRAS  360
TNCGPMVSHY QLLYELALSL RPREPKNFYS VPRSSRLRDK NKNEGDIMVK ENFVGSVAEN  420
NNLLSVLLDK NYCIIVPNTD FFVPSFPVAL ESEATVKQRF TAGPCSISQQ GAENMAVDHV  480
AVDKVTDIQD MSGSLYPCET SLVGCSNRKL YETKYGQRDA AALCLSTSEI QSRGIDKARS  540
HPAGGILDQG RLPCVQCGIL SFACVAIIQP REAAVQFIMS KECISSSAKQ GGIGASDDTS  600
NWIDQSHEIS PPPGPASGTD DNVKHTVSLA HVSDRCRELY ASNTDGCTSA LGLLASAYDS  660
SDSDDETTED VLKHSKKNDS VNQSMDTQIL ETSASYSSTV RCQKTNSHSH EEECEARATS  720
LMKPVSHNSR PISQSNRDTD IDQFIELGKS GTQCSGYLDL VDDLTTSVLK SSSDTCVSAA  780
KASMDPDVLT MLRYNKDSCR MHVFCLEHAL ETWTQLQQIG GANIMLLCHP EYPRAESAAK  840
VIAEELGIKH DWKDITFKEA TEEDVKKIRL ALQDEDAEPT GSDWAVKMGI NIYYSAKQSK  900
SPLYSKQIPY NSIIYKAFGQ ENPDSLTDYG CQKSGSTKKK VAGWWCGKVW MSNQVHPLLA  960
REREEQNSSV VYGKAMFTTI SHGKVQDEAS TRCNTSNRTP SKRTSRRKKG VSAEKSKPKN  1020
KRSTASDEAS MHCSGLGMNS GVIHDQTENS DDYDKHGNGD EIEEGTNPQK YQQRKLQNVT  1080
RKSSSKKRKD EKRTDSFHEL YDEDNGVDYW LNMGSGHDAT LGNSQQQSPD PVKVKSGGKL  1140
QGKRKSSKYK SNDDLLNEEN KLQKMNKKSS SKKQKNDKIN RQLQEDQTED DHMDHLVDVA  1200
VADEVTLDNE DKITEDKIDD VKVKSRGKSQ NGKRKGSKHQ ASDGLRAGNK VAKFPCDIEG  1260
CDMSFSTQQD LLLHKRDICP VKGCKKKFFC HKYLLQHRKV HIDERPLKCT WKGCKKAFKW  1320
PWARTEHMRV HTGVRPYECQ EPGCGQTFRF VSDFSRHKRK TGHSSDKRRK NST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	1e-153	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G09840.1