PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G10680.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

M-type_MADS

Protein Properties

Length: 560aa MW: 59809.8 Da PI: 8.6843

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G10680.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	67.3	1.5e-21	19	66	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ri+nk +rqvtf+kRr g++KKA+EL L++a vav++fs+ ++y + OGLUM12G10680.1 19 RIDNKERRQVTFTKRRGGLFKKASELALLTGASVAVVVFSPAKHVYAF 66 8*********************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence
MVHPLGRTSM GRQRIEIRRI DNKERRQVTF TKRRGGLFKK ASELALLTGA SVAVVVFSPA 60 KHVYAFGHPS VDAVLRSYAS VPGEAAAVAP VPVHGSSGGE DVDLLGLRLA ADDTGAQVAA 120 EHARMRDVAA RIVQAKAGRW FWWEAHVDAL GEAELPEFVT ALKKLRDNVG RHANALLAPQ 180 PPPLPLQQKQ RRRRSPSGPG CPPLAATPRA APNSCRQVTA TSRSSAVRRS SKTYTIPSAS 240 TPAHKTSRSS AVRRSSKTYT IPSASTPAHK ISGCCHSPEE DHDPLSLLAL LGSWLSLLVL 300 LGSWAVQPED FWFSAPKKGI MVFALPGEPG LTEVAGDFKI QFHDRQGDFY CWLNTTMMEN 360 RVTLNPTDLD DFDKRKLPSP GFQVEVVLVD YDGSQPPKPK PAAASTDQKS EADSSTGTVA 420 KGNNASSAEV SNKESARNDK DDVFSDSEAE DGSSKGRREK VSRNVEGTTN AAKASETSSV 480 QKEASASASR IEKVSITSEQ GSARTPDAAP LKSGVSSKSS STTAPPPPPA AADSSMSEFK 540 AIAADASVFS FGDEDDYESE

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence

MVHPLGRTSM GRQRIEIRRI DNKERRQVTF TKRRGGLFKK ASELALLTGA SVAVVVFSPA  60
KHVYAFGHPS VDAVLRSYAS VPGEAAAVAP VPVHGSSGGE DVDLLGLRLA ADDTGAQVAA  120
EHARMRDVAA RIVQAKAGRW FWWEAHVDAL GEAELPEFVT ALKKLRDNVG RHANALLAPQ  180
PPPLPLQQKQ RRRRSPSGPG CPPLAATPRA APNSCRQVTA TSRSSAVRRS SKTYTIPSAS  240
TPAHKTSRSS AVRRSSKTYT IPSASTPAHK ISGCCHSPEE DHDPLSLLAL LGSWLSLLVL  300
LGSWAVQPED FWFSAPKKGI MVFALPGEPG LTEVAGDFKI QFHDRQGDFY CWLNTTMMEN  360
RVTLNPTDLD DFDKRKLPSP GFQVEVVLVD YDGSQPPKPK PAAASTDQKS EADSSTGTVA  420
KGNNASSAEV SNKESARNDK DDVFSDSEAE DGSSKGRREK VSRNVEGTTN AAKASETSSV  480
QKEASASASR IEKVSITSEQ GSARTPDAAP LKSGVSSKSS STTAPPPPPA AADSSMSEFK  540
AIAADASVFS FGDEDDYESE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	2e-26	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G10680.1