PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G11100.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 434aa    MW: 46954.4 Da    PI: 6.5991
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G11100.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.48e-2191332128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        GfrF+P++ee++++yL + ++g++ + +e  i+++d+y + eP+dL  k    +++ + + +fF+  ++ +    + +r++  g W ++ + 
  OGLUM12G11100.1   9 KLGFRFNPSQEEVITYYLPRLIAGHPPKDTEGyIHRADVYGAnEPRDLAgKyapVARSPNGDRFFFTGCKRVKG---KFSRSAGGGAWVSQSS- 98 
                      67************************6655555*******8769****843443333334478***99998764...7999999*****8866. PP

              NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k++++++g ++g  k + f     + g+ktdW+m+ey+l
  OGLUM12G11100.1  99 KDLKNREGIKIGEVKNFRFK----KGGNKTDWLMEEYHL 133
                      888888*************8....56889********98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    
MASLDLLLKL GFRFNPSQEE VITYYLPRLI AGHPPKDTEG YIHRADVYGA NEPRDLAGKY  60
APVARSPNGD RFFFTGCKRV KGKFSRSAGG GAWVSQSSKD LKNREGIKIG EVKNFRFKKG  120
GNKTDWLMEE YHLCGKEAGG VVEPVVCRIY VSPRAAPDSV VHQESAALPP PQELVPPPQE  180
FAPPPYPAAQ AAPQAPAPPR QVPVITQQQA PPQKRPAAPV AEPPCATKKM KGAVSAKPMA  240
PQSSVTASAA PPRCAVAPSQ HHPPFQTYPT DPFEPPAPAA SVTQPSVPAT PEQGPAYVPD  300
PADIGMEMDE LMSFLDSTPV DGILPSQLFE YDELAKELED ALQGGGEEDG NDNPPRCATP  360
PTPPPPRPAS WPAMAPLPPH PPILTFPKDP GGCDKQSQGG YRVLLKDMGD DQIDQQWLKV  420
YLKDYHHLMK SCKL