PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G12500.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 210aa MW: 22552.8 Da PI: 6.3038

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G12500.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	54.8	2e-17	79	126	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv +++L G++ lmkv+gLt ++vkSHL kYRl+ OGLUM12G12500.1 79 KARRCWSPELHRRFVATLQRLDGPQ--------GLMKVDGLTDDEVKSHLHKYRLH 126 68*****************9998........79*****************97 PP
2	Myb_DNA-binding	22.9	2e-07	81	124	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 r W++e++ ++v ++l g+ m g+t+ ++ks+++ky+ OGLUM12G12500.1 81 RRCWSPELHRRFVATLQRLDGP-----QGLMKvDGLTDDEVKSHLHKYR 124 668***************88.....55666669**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence
MSISNHHVSN AFMPLATSLV FAKSPEKAAT ATPLPAAVPD LSLSSPACPA APASVTSSAV 60 TDVARVQRRR QQQQAVQRKA RRCWSPELHR RFVATLQRLD GPQGLMKVDG LTDDEVKSHL 120 HKYRLHTRRA SDGGGDSGGL WTPPPEQYTT SQHNTSQSPA LTVSSSHAAS VTAGDSCDGG 180 EEEEEEEEDD GKSESYSWEM QNGARASLSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	3e-18	G2-like family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G12500.1