PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G12510.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 810aa MW: 88496.5 Da PI: 8.1643

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G12510.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.5	1.5e-08	176	218	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E++ + +a +q G++ +++I +++ ++ q++++++ + OGLUM12G12510.1 176 AWTRQEEQNFFNALRQVGKN-FEKITLRVQ-SKSKDQVRHYYYRL 218 6***************99.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 810 aa Download sequence
MWQFAQFGLM RMRSSSPCGP SRRWSVATNR RWSSGDQHRL AFRCTACCCC RRRCTLATSV 60 TALLVTLAGA AGHAGEERDR SGTAAGNGVA VAAFSGPKCK NPAKIIVRPC CSASTPVSSP 120 RELAHPPPCA DLHRFRDFAS SGAVVRPAAS AASWFGGSTE PPMSLVRSAP ARQWAAWTRQ 180 EEQNFFNALR QVGKNFEKIT LRVQSKSKDQ VRHYYYRLVR RMKKLLGPEF SLDAKNSKDT 240 IAAMLCWWSL LEKFSCSASK LHLKPRRFKT FVEALGNQLL KDRNKTRKKC PRGDVCLSSS 300 SSAVNRTPGN ESFSVKLLAV DVSNGSKVGS SKGSFFKKVT EPNCSNKSGA TKGDLSATRT 360 VKQKRRAGGV VASAAYKKWE RAAMAGVSLV ADAAEELERN TVNADARMLS PSSSNACTVD 420 GLGTNHIKEA DQQAPAKLKL QLFPINEATR KALEKDEHNP HLELTLSARK KISSVLEHLN 480 RKWGNSNIAS GELLLFPYCA HQEDLATYQR WTTKDTVAVA DVFLSVNSPS VFRLRYGWFS 540 LAELEAGVSE ISLTHFENCL IPEDIHAKSP SEACVQKDGK SAQVPEQCID VLPSQFGRQN 600 QDQVTTNQVF EVDQGMDCAA VSEGEWADTL TDISVGYLLT EASREQPALA SHSTIWGAEE 660 TCDAFSFNLP ASRKREGSNN SASSSPDSDS DVHPSNSEGF QGFLQDLAGA AVAHNPCIDD 720 AKDIESLCAE SPPRSDHDSA PKDQSLADLY WPDSLGPLDL DIPSATYHAD DLLLGDSQNS 780 WNRMMANSLD AFRNLSFFTA DKNDSIPSIM

Sequence ? help Back to Top

Protein Sequence Length: 810 aa Download sequence

MWQFAQFGLM RMRSSSPCGP SRRWSVATNR RWSSGDQHRL AFRCTACCCC RRRCTLATSV  60
TALLVTLAGA AGHAGEERDR SGTAAGNGVA VAAFSGPKCK NPAKIIVRPC CSASTPVSSP  120
RELAHPPPCA DLHRFRDFAS SGAVVRPAAS AASWFGGSTE PPMSLVRSAP ARQWAAWTRQ  180
EEQNFFNALR QVGKNFEKIT LRVQSKSKDQ VRHYYYRLVR RMKKLLGPEF SLDAKNSKDT  240
IAAMLCWWSL LEKFSCSASK LHLKPRRFKT FVEALGNQLL KDRNKTRKKC PRGDVCLSSS  300
SSAVNRTPGN ESFSVKLLAV DVSNGSKVGS SKGSFFKKVT EPNCSNKSGA TKGDLSATRT  360
VKQKRRAGGV VASAAYKKWE RAAMAGVSLV ADAAEELERN TVNADARMLS PSSSNACTVD  420
GLGTNHIKEA DQQAPAKLKL QLFPINEATR KALEKDEHNP HLELTLSARK KISSVLEHLN  480
RKWGNSNIAS GELLLFPYCA HQEDLATYQR WTTKDTVAVA DVFLSVNSPS VFRLRYGWFS  540
LAELEAGVSE ISLTHFENCL IPEDIHAKSP SEACVQKDGK SAQVPEQCID VLPSQFGRQN  600
QDQVTTNQVF EVDQGMDCAA VSEGEWADTL TDISVGYLLT EASREQPALA SHSTIWGAEE  660
TCDAFSFNLP ASRKREGSNN SASSSPDSDS DVHPSNSEGF QGFLQDLAGA AVAHNPCIDD  720
AKDIESLCAE SPPRSDHDSA PKDQSLADLY WPDSLGPLDL DIPSATYHAD DLLLGDSQNS  780
WNRMMANSLD AFRNLSFFTA DKNDSIPSIM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.2	1e-151	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G12510.1