PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G13410.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 260aa    MW: 28040.6 Da    PI: 9.9389
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G13410.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.55.8e-4591441128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      lppGfrF+Ptdeelvv+yL++++ g++l+ +  i++v+++ ++P+dL p     +e+e yfF++++ ky +g+r+nrat +gyWkatgk+k+v 
  OGLUM12G13410.1   9 LPPGFRFRPTDEELVVHYLRRRALGSPLPPAVDIPDVRLLAHDPSDLlP--PGWSEQERYFFTCKEAKYVKGRRANRATGAGYWKATGKEKPVA 100
                      79*************************998556**************43..3447899***********************************9 PP

              NAM  94 sk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++            +vg+k++Lvfy+g+ p+g+ktdWvmheyrl
  OGLUM12G13410.1 101 VSvvaaprsqaAAVVVGMKRSLVFYRGKPPTGKKTDWVMHEYRL 144
                      988888765544455***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
METTAAKKLP PGFRFRPTDE ELVVHYLRRR ALGSPLPPAV DIPDVRLLAH DPSDLLPPGW  60
SEQERYFFTC KEAKYVKGRR ANRATGAGYW KATGKEKPVA VSVVAAPRSQ AAAVVVGMKR  120
SLVFYRGKPP TGKKTDWVMH EYRLAGAGLA PCRRAATADH PARPAEGWVL CRVFRKKGSA  180
AASTASPTAD ADDDDATTER ADDAAAGVRF IDFFARADAR RRRAASPVSS SCVTDASAEH  240
CREQETTSRN GGAAAGDASD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-50NAC family protein